Showing : mast • reset
1
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2
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308
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Extracting genomic sequences using agat and bedtools yields different results
MAST
updated 8 weeks ago by ★ 4.1k • written 8 weeks ago by • 0
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0
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244
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Error: grouping factors must have > 1 sampled level
Mast mastR MAST
updated 10 weeks ago by 65k • written 10 weeks ago by • 0
0
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0
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179
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Comparing the effects of a condition over time in two seperate tissues
MAST
12 weeks ago Dillon • 0
0
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1
reply
332
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Mismatch between MAST DE results and expression dot plot
MAST mastR
4 months ago Simon • 0
0
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0
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455
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How to extract P-Values and LogFC from lrTest in MAST?
pvalue logFC lrtest MAST
13 months ago Tadeoye ▴ 20
1
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7
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1.3k
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Likelihood ratio test (lrTest) in MAST comparing full to reduced model; and another question on controlling for CDR
MAST
14 months ago • updated 13 months ago Ken C • 0
0
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0
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414
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MAST for single cell ATAC data
MAST
14 months ago zuljiamel1991 ▴ 10
1
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2
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1.3k
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Input for MAST
MAST
15 months ago • updated 14 months ago zuljiamel1991 ▴ 10
0
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0
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956
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How to interpret MAST coefficients
DifferentialExpression MAST
19 months ago Ismail • 0
0
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0
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490
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How does MAST caculate log fc
MAST
21 months ago Chenghao • 0
0
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0
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696
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Differential expression with single cell data: any good two component (hurdle) models recently?
SingleCellWorkflow DifferentialExpression SingleCell SingleCellMultiModal MAST
23 months ago Nik Tuzov ▴ 80
0
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0
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720
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Performing DGE analysis with MAST on a variable with more than 2 levels
MAST DEG SingleCell
2.0 years ago zroger499 • 0
0
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0
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904
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Low logFCs using MAST for scRNA-seq
MAST
2.1 years ago learner_MD • 0
0
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0
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751
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Issues geting meaninfull results for single cell DGE using MAST
MAST SingleCell
2.3 years ago zroger499 • 0
1
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0
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650
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When I run `zlm` with several clusters, how to compare 1 cluster versus all the others?
MAST
2.8 years ago Dan • 0
0
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1
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946
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Differentially expressed genes across three different conditions
MAST SingleCell diffGeneAnalysis
updated 2.9 years ago by 65k • written 2.9 years ago by • 0
0
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1
reply
886
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MAST zlm shows warning: Coefficients ... are never estimible and will be dropped.
MAST
updated 3.0 years ago by • 0 • written 3.2 years ago by • 0
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0
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1.1k
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How to do pairwise multiple comparisons in MAST
MAST
3.3 years ago sysumed3615 • 0
0
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2
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1.1k
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MAST compare two conditions with several donors
MAST
updated 3.3 years ago by • 0 • written 3.5 years ago by • 0
0
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3
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1.5k
views
MAST invalid Hypothesis, class objectORconnection error
R MAST scRNASeq
3.8 years ago TriS ▴ 200
1
vote
3
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1.3k
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comparing 2 models with confounders with MAST (scRNA-seq DEA)
scRNA-seq MAST confounders
updated 4.4 years ago by ▴ 270 • written 4.4 years ago by ▴ 10
0
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1
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1.3k
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About getting DE genes using MAST
MAST
updated 4.4 years ago by ▴ 270 • written 4.4 years ago by • 0
0
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0
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887
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DEG among experimental and control group in MAST
MAST DEG batch effects
4.7 years ago chendianyu • 0
0
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1
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1.6k
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Minimum number of cells required for the MAST
MAST scRNAseq differential expression
4.7 years ago Andrew_McDavid ▴ 270
2
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3
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1.2k
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Logistic regression in MAST - question
mast
updated 5.2 years ago by ▴ 270 • written 5.2 years ago by ▴ 80
2
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7
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1.7k
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Estimation of non-trivial contrasts in MAST
mast
updated 5.2 years ago by ▴ 270 • written 5.2 years ago by ▴ 80
0
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1
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1.1k
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How can I compute AIC for MAST hurdle model fitted in the whole dataset?
MAST AIC calcuation Parameters single cell hurdle model
updated 8 weeks ago by ▴ 20 • written 5.3 years ago by • 0
0
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2
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1.2k
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Warning in bayes fit in MAST GSEA
MAST GSEA bayesglm.fit
5.7 years ago santos22903 • 0
0
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6
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1.4k
views
Error in zlm function model matrix
MAST
6.0 years ago jka8119 ▴ 10
2
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4
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1.9k
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Interpretation of cngeneson when doing differential expression analysis in MAST
mast differential gene expression
updated 6.1 years ago by ▴ 270 • written 6.1 years ago by ▴ 40
2
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1
reply
2.4k
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MAST: testing differential expression with a nested factorial design
MAST single-cell rna-seq
updated 6.1 years ago by ▴ 270 • written 6.1 years ago by ▴ 20
2
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1
reply
1.1k
views
How to load data csv in MAST
mast
6.1 years ago francesco.brundu@gmail.com ▴ 40
0
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4
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1.3k
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MAST: What does the function gseaAfterBoot do exactly?
MAST
6.2 years ago dfm2129 • 0
0
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8
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1.8k
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MAST - not getting Hurdle p values
MAST
updated 6.2 years ago by ▴ 270 • written 6.2 years ago by ▴ 10
2
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3
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2.1k
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Using MAST with DropSeq data
MAST mast dropseq
updated 6.3 years ago by ▴ 270 • written 6.3 years ago by ▴ 10
4
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3
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2.0k
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single-cells RNA-seq analysis by MAST with unbalanced group size
mast single-cell rna-seq differential analysis
updated 6.4 years ago by ▴ 270 • written 6.4 years ago by ▴ 100
0
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2
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1.3k
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What is the most useful distance measure to use for cell clustering based on MAST deviance residuals?
MAST
6.6 years ago alexanderaivazidis • 0
3
votes
3
replies
2.4k
views
How do you test a contrast in MAST?
MAST single-cell differential gene expression
updated 6.7 years ago by ▴ 270 • written 6.7 years ago by ▴ 40
4
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1
reply
1.8k
views
NAs in continuous coefficient and fold change in `zlm`
scrnaseq MAST differential gene expression
6.8 years ago Andrew_McDavid ▴ 270
2
votes
1
reply
4.2k
views
Intepretation of Z scores for gene set enrichment analysis in MAST
MAST scRNA GSEA
updated 6.8 years ago by ▴ 270 • written 6.8 years ago by • 0
0
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3
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1.4k
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Modeling Dose-response data in MAST
MAST sc-rnaseq scrnaseq
updated 6.8 years ago by ▴ 270 • written 6.8 years ago by • 0
0
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1
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1.3k
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Removal of batch effects before non-linear clustering for scRNAseq
scrnaseq MAST
7.1 years ago Andrew_McDavid ▴ 270
3
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2
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2.2k
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MAST reported warning "Coefficients ... are never estimible and will be dropped."
mast sc-rnaseq
7.1 years ago shao ▴ 100
43 results • Page 1 of 1
Recent ...
Replies
Answer: all variables in design formula must be columns in colData (Deseq2) error by ATpoint ★ 4.1k
Your code is poorly readable. Suggest you select and then highlight with markdown using the `10101` button. Generally, colData(dds) must…
Answer: Subsetting RNAseq data | voomaByGroup() by Gordon Smyth 50k
Judging from your MDS plot, cell types 1 and 2 look radically different, so it would make perfect sense to analyse them separately. There's…
Answer: Numerical differences in DESeq2 output depending on different design matrix cons by Michael Love 42k
Yes there can be small numerical differences in the estimated quantities because of how the algorithms decide to stop iterating.
Answer: DESeq2- Mysterious interaction suppresses DEGs by Michael Love 42k
Removing samples from one group nevertheless changes the variance estimation (dispersion) for all comparisons. So you could have pushed one…
Comment: Ensembl plants at annotationHub? by Daniele • 0
Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!
Votes
Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
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