Bioconductor Differential analysis

Showing : differential analysis • reset

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578

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DiffBind PCA Differential Analysis

updated 3.7 years ago by Rory Stark ★ 5.1k • written 3.7 years ago by jrp208 • 0

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1.2k

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diffbind ATACseq ATAC counts differential analysis

updated 4.7 years ago by Rory Stark ★ 5.1k • written 4.7 years ago by pgontarz ▴ 10

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1.0k

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diffbind differential analysis genetics #chip-seq

updated 4.7 years ago by Rory Stark ★ 5.1k • written 4.8 years ago by ryclb22 • 0

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936

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edgeR FDR p-value Benjamini-Hochberg Differential Analysis

updated 4.8 years ago by Aaron Lun ★ 28k • written 4.8 years ago by ilovesuperheroes1993 • 0

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989

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diffbind atac-seq differential analysis deseq2

updated 5.1 years ago by Rory Stark ★ 5.1k • written 5.1 years ago by duvaller • 0

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1.4k

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deseq2 deseq differential analysis proteomics

5.7 years ago blehtine • 0

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956

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differential analysis differential gene expression coexpression correlation

updated 5.8 years ago by Peter Langfelder ★ 2.8k • written 5.8 years ago by hkarakurt ▴ 20

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1.7k

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mast single-cell rna-seq differential analysis

updated 5.9 years ago by Andrew_McDavid ▴ 270 • written 5.9 years ago by shao ▴ 100

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993

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reportingtools microarray annotation differential expression differential analysis

updated 6.0 years ago by James W. MacDonald 64k • written 6.0 years ago by jirkanov • 0

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3.8k

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deseq2 multiple factor design differential analysis differential gene expression

updated 6.0 years ago by Michael Love 41k • written 6.0 years ago by hsbio ▴ 10

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2.2k

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DiffBind dba.count Chip-Seq Differential analysis

updated 2.7 years ago by Goku • 0 • written 6.2 years ago by urjaswita ▴ 40

11 results • Page 1 of 1

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Comment: Normalised counts from RUVg in RUVSeq by Shaimaa Gamal • 0

Hello I was wondering if I should use ruv-corrected counts and ruv lib sizes to create a DGE object that can be used later for DE analysis …

Comment: enrichGOgradient color change by James W. MacDonald 64k

You could look at my answer and extrapolate from there.

Comment: enrichGOgradient color change by WU • 0

I would like to ask how to make the counts legend black. Thank you.

Answer: Problems with FLOWAI by Alexander • 0

Hi. The length of the file path, or whether the files are local on the computer has nothing to do with it in my experience. I watched the a…

Answer: Asses fit of variance prior by Gordon Smyth 49k

> is it advisable to asses the fit of the variance prior before running limma? No, neither necessary nor possible. If this sort of checki…

Votes

Answer: enrichGOgradient color change

Answer: Filter genes by expression for voomLmFit

How to know if I should use voomWithQualityWeights() or not?

Awards • All

Popular Question to Lluís Revilla Sancho ▴ 720

Scholar to Gordon Smyth 49k

Popular Question to Frederik Ziebell ▴ 20