Showing : minfi • reset
2
votes
1
reply
188
views
minfi latest update for EPIC V2 chip
minfi minfiDataEPIC
updated 13 days ago by 66k • written 14 days ago by • 0
1
vote
4
replies
234
views
minfi::read.metharray.exp
minfiData minfi
updated 27 days ago by ▴ 780 • written 28 days ago by • 0
2
votes
6
replies
1.6k
views
How to get DMR for Infinium methylation EPIC v2
ChAMP DMRcate minfi
updated 6 weeks ago by ▴ 180 • written 5 months ago by ▴ 10
0
votes
4
replies
267
views
Minfi - estimatecellscount
min minfi
updated 21 days ago by 66k • written 7 weeks ago by • 0
0
votes
0
replies
220
views
Can MethylationEPIC v1 and v2 data be used together for analysis with minfi?
minfi minfiDataEPIC
10 weeks ago Felix • 0
0
votes
1
reply
195
views
Matrix multiplication error to estimate telomere length
methylclockData minfi methylclock minfidata
updated 11 weeks ago by 66k • written 11 weeks ago by • 0
0
votes
7
replies
504
views
error in reading idat files and creating rgset
minfi MethylationArray
updated 3 months ago by 66k • written 3 months ago by • 0
0
votes
2
replies
614
views
EPIC array hg38 annotation?
minfi DMRcate
3 months ago mycetes • 0
0
votes
0
replies
276
views
Normalization in methylation analysis
Methylation minfi preprocessQuantile MethylationArrayData preprocessFunnorm
5 months ago kyj2226 • 0
3
votes
2
replies
491
views
What is the meaning of "CpG interrogation" and "single nucleotide extension(SBE)"?
SBE CpG minfi CpGinterrogation
5 months ago kyj2226 • 0
0
votes
1
reply
356
views
Error in reading my csv file in minfi
minfiDataEPIC minfi
updated 5 months ago by ▴ 780 • written 6 months ago by • 0
0
votes
5
replies
977
views
minfi, limma, adjusting for cell counts - integrating the resoults of estimateCellCounts into the linear regression model
minfi limma
7 months ago dorota.komar • 0
0
votes
2
replies
692
views
minfi differential methylation analysis errors
minfi
7 months ago matthew.sinton • 0
0
votes
3
replies
610
views
minfi bumphunter - probe IDs
minfi bumphunter
updated 7 months ago by ▴ 780 • written 7 months ago by • 0
0
votes
14
replies
2.0k
views
Error while preprocessing raw data from methylation array using minfi package
minfi
updated 3 months ago by • 0 • written 8 months ago by • 0
0
votes
1
reply
411
views
Two EPIC Methylation Array Analysis Questions
minfiDataEPIC minfi
updated 8 months ago by 66k • written 8 months ago by • 0
0
votes
2
replies
590
views
ageData (minfi pipeline)
ageData missMethyl differentialvariability minfi
updated 8 weeks ago by • 0 • written 12 months ago by • 0
6
votes
5
replies
6.2k
views
minfi support of illumina Infinium methylationEPIC v2.0
methylationEPICv2.0 minfi
updated 6 months ago by ▴ 10 • written 14 months ago by ▴ 50
0
votes
9
replies
3.2k
views
clarification about bumphunter value output
minfi bumphunter
updated 12 months ago by • 0 • written 6.2 years ago by • 0
0
votes
11
replies
3.8k
views
bug in cpg.annotate() and DMR.plot: bad defaults for what and arraytype arguments
DMRcate minfi
updated 3 months ago by ▴ 180 • written 7.2 years ago by ★ 2.0k
20 results • Page 1 of 1
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Comment: Ensembl plants at annotationHub? by Johannes Rainer ★ 2.0k
You can get the `EnsDb` EnsDb.Taestivum.v112.sqlite (for Ensembl 112/ ensemblgenomes 59) [here](https://www.dropbox.com/sh/msic0luivbldmb7/…
Comment: Errors in chromosome annotation-biomaRt by blackwidowzzz • 0
I recommend using a different dataset specific to your rat genome assembly version 8. You can search for available datasets within Ensembl …
Answer: Errors in chromosome annotation-biomaRt by James W. MacDonald 66k
If you are just using HGNC symbols for the lookup, and you are trying to get NCBI IDs, then I wouldn't use `biomaRt` because it's based on …
Comment: Help with ENmix readidat by James W. MacDonald 66k
Please don't add to posts from two years ago. Instead make a new post. Also, please read the help page for `readidat`. The only reason to …
Comment: LRT, more than two conditions and pairwise comparisons by James W. MacDonald 66k
In that case, probably easiest to subset to the groups being compared.
Votes
Answer: Error retrieving ensembl gene id using biomaRt...
Comment: LRT, more than two conditions and pairwise comparisons
Answer: Control group between 2 batches have different expression in RNAseq data
Answer: How to remove batch effect to combine RNAseq data from 2 different experiments?
Comment: DESeq2- Mysterious interaction suppresses DEGs
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