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minfidataepic
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119
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How to perform a methylation analyisis from beta values matrix and pd.csv
minfiDataEPIC
21 days ago
yemeijie123
• 0
2
votes
1
reply
523
views
minfi latest update for EPIC V2 chip
minfi
minfiDataEPIC
updated 11 weeks ago by
James W. MacDonald
66k • written 11 weeks ago by
e1271094
• 0
0
votes
0
replies
329
views
Can MethylationEPIC v1 and v2 data be used together for analysis with minfi?
minfi
minfiDataEPIC
4 months ago
Felix
• 0
0
votes
1
reply
452
views
Error in reading my csv file in minfi
minfiDataEPIC
minfi
updated 8 months ago by
Basti
▴ 780 • written 8 months ago by
Ana
• 0
0
votes
1
reply
602
views
Create design matrix for differential methylation analysis
Annotation
annotate
DifferentialMethylation
minfiDataEPIC
updated 10 months ago by
Basti
▴ 780 • written 10 months ago by
titangerd
• 0
0
votes
6
replies
2.0k
views
annotation EpicV2
minfiDataEPIC
EpicV2
updated 10 months ago by
Zuguang Gu
▴ 280 • written 11 months ago by
Izabela.ams
• 0
0
votes
1
reply
490
views
Two EPIC Methylation Array Analysis Questions
minfiDataEPIC
minfi
updated 11 months ago by
James W. MacDonald
66k • written 11 months ago by
phelankj
• 0
0
votes
1
reply
2.9k
views
Warning messages in detecting P-values
minfiDataEPIC
methylationArrayAnalysis
updated 12 months ago by
ATpoint
★ 4.2k • written 12 months ago by
rae.alshammari
▴ 10
0
votes
1
reply
611
views
LmFit error in EPIC methylation array analysis, Minfi
methylationArrayAnalysis
minfi
MethylationArrayData
minfiDataEPIC
MethylationArray
updated 16 months ago by
Gordon Smyth
51k • written 16 months ago by
Grace
• 0
0
votes
1
reply
1.1k
views
Density Plot using Noob Normalisation vs Quantile Normalisation
Quantile
noob
Normalization
minfi
minfiDataEPIC
updated 23 months ago by
James W. MacDonald
66k • written 23 months ago by
mikat
• 0
0
votes
1
reply
952
views
EPIC ARRAY ANALYSIS
minfiDataEPIC
#SexPrediction
minfi
updated 2.8 years ago by
Basti
▴ 780 • written 2.8 years ago by
nucasa
• 0
1
vote
1
reply
2.2k
views
plotSex error message
minfiData
plotsex
minfi
minfiDataEPIC
r
updated 3.4 years ago by
suman
• 0 • written 3.4 years ago by
Bethan
• 0
0
votes
2
replies
1.9k
views
Beyond dmpFinder for methylation analysis, using limma for covariates
minfiDataEPIC
arrays
limma
minfi
Epigenetics
updated 3.7 years ago by
Gordon Smyth
51k • written 3.7 years ago by
Jeff
▴ 20
13 results • Page
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Comment: 'path' must be string
by
James W. MacDonald
66k
Yes. We already knew that from the error message, and I told you that in my previous email. The point wasn't to figure out *where* the err…
Comment: 'path' must be string
by
cpierce2
• 0
I ran the debugger and this is the line that causes the error: ``` if (any(startsWith(pkcData[["RTS_ID"]][1L], "RTS")) & any(startsWith(pr…
Comment: Generating surrogate variables across multiple variables of interest
by
Robert
• 0
Yes, we have several biomarkers, and a proteomic set, so we are characterizing each biomarker by it's proteomic association(s). The use for…
Comment: Error running tximeta
by
Guido Hooiveld
★ 4.0k
FYI (since I just finalized a run with `salmon`). For each sample (`.`) an output folder is created that contains 3 files (`cmd_info.json`…
Comment: Error running tximeta
by
Michael Love
42k
Tximeta uses the full directory. There are files that give the key information about the transcriptome. It's not a good idea to selectively…
Votes
Question: Deconvolution Methods on RNA-Seq Data (Mixed cell types)
Answer: Understanding how to contrast two treatments in DESeq2
Answer: Understanding how to contrast two treatments in DESeq2
Cannot extract TxFeatures for a defined GRanges object
Limma time series spline help
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Lluís Revilla Sancho
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maltethodberg
▴ 180
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Michael Love
42k
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Leonardo Collado Torres
★ 1.1k
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Gordon Smyth
51k
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