Bioconductor Missing data

Showing : missing data • reset

vote

replies

2.5k

views

Missing Data TCGAbiolinks Kaplan-Meier LIHC Xenabrowser

5.9 years ago jam526 • 0

votes

replies

3.5k

views

deseq2 sample_table missing data

updated 6.7 years ago by g.wang2 • 0 • written 10.5 years ago by anpham ▴ 70

votes

1.9k

views

deseq2 paired samples missing data multiple treatments

updated 6.9 years ago by Michael Love 43k • written 6.9 years ago by greg.deakin • 0

votes

replies

3.3k

views

limma missing data methylation normalization

updated 8.0 years ago by Aaron Lun ★ 29k • written 8.0 years ago by mheydarpour ▴ 10

votes

replies

2.9k

views

limma contrast missing data lmfit makecontrasts

updated 8.1 years ago by Gordon Smyth 53k • written 8.1 years ago by wewolski ▴ 10

votes

replies

1.1k

views

pcamethods missing data

8.5 years ago eli-sava • 0

votes

replies

9.0k

views

software error rnaseq wgcna missing data

9.8 years ago • updated 9.4 years ago dvillarlozano ▴ 10

votes

1.3k

views

cellhts2 upload missing data

updated 9.7 years ago by Joseph Barry ▴ 160 • written 9.7 years ago by zmorehouse • 0

vote

1.2k

views

missing data filter

updated 9.8 years ago by James W. MacDonald 68k • written 9.8 years ago by rgescudero • 0

votes

replies

1.8k

views

missing data missing value imputation impute MICE bioconductor

10.0 years ago svlachavas ▴ 840

votes

1.7k

views

software error missing data workflowinstall

10.4 years ago anoll2 • 0

votes

replies

1.6k

views

bayseq missing data

10.4 years ago k.w.lau • 0

12 results • Page 1 of 1

Recent ...

Replies

Comment: Help with defining groups by Phinney, Brett ▴ 10

I got it working , thank you!!!

Comment: Check removeBatchEffect effectiveness by massimo • 0

I would kindly ask for additional support. When not including the design_timepoint argument in removeBatchEffect and thus keeping the inter…

Comment: Error Loading Experiment from SimBenchData Package by ksankaran • 0

Aha, that was it! The object was class Seurat, but I didn't have it installed. After installing, everything works as expected.

Comment: Streamlining the computing time for MiloDE p-value correction in large dataset? by ATpoint ★ 5.0k

Is a method that is so computationally expensive really beneficial and necessary? You seem to have biological replication, don't you, so ps…

Answer: NA values for DESeq2 p-values and adjusted p-values using large sample sizes by ATpoint ★ 5.0k

Outliers without replacement, independent filtering or all-zero counts for that gene. That's the three options that trigger NAs https://bio…

Votes

Comment: Check removeBatchEffect effectiveness

Gene expression associated with continuous (quantitative) traits (Limma/edgeR/correlation)

Answer: Error Loading Experiment from SimBenchData Package

Comment: incomplete imputation of missing values with LEA impute() function

Answer: Expected memory usage for analyzing large single-cell seq datasets (> 450,000 ce

Awards • All