Bioconductor Missing data

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Missing Data TCGAbiolinks Kaplan-Meier LIHC Xenabrowser

5.2 years ago jam526 • 0

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3.2k

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deseq2 sample_table missing data

updated 6.0 years ago by g.wang2 • 0 • written 9.8 years ago by anpham ▴ 60

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deseq2 paired samples missing data multiple treatments

updated 6.2 years ago by Michael Love 43k • written 6.2 years ago by greg.deakin • 0

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2.9k

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limma missing data methylation normalization

updated 7.3 years ago by Aaron Lun ★ 28k • written 7.3 years ago by mheydarpour ▴ 10

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limma contrast missing data lmfit makecontrasts

updated 7.4 years ago by Gordon Smyth 52k • written 7.4 years ago by wewolski ▴ 10

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976

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pcamethods missing data

7.8 years ago eli-sava • 0

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software error rnaseq wgcna missing data

9.1 years ago • updated 8.7 years ago dvillarlozano ▴ 10

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1.2k

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cellhts2 upload missing data

updated 9.0 years ago by Joseph Barry ▴ 160 • written 9.0 years ago by zmorehouse • 0

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1.1k

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missing data filter

updated 9.2 years ago by James W. MacDonald 67k • written 9.2 years ago by rgescudero • 0

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missing data missing value imputation impute MICE bioconductor

9.3 years ago svlachavas ▴ 840

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1.6k

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software error missing data workflowinstall

9.7 years ago anoll2 • 0

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bayseq missing data

9.8 years ago k.w.lau • 0

12 results • Page 1 of 1

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Comment: Identifying potentially associated gene set to drug response using GSVA by kl2023gege • 0

Thanks for sharing. You gotta check out Sprunki Phase Games on [Sprunki Phase](https://sprunkiphase.net). It's a wild ride of tunes and tw…

Answer: I am having issues with bowtie2_build by James W. MacDonald 67k

Is proof.fa an actual FASTA file? Have you tried using the demo data that comes with the package? See the [vignette under Build Bowtie Inde…

Answer: DEG analysis across multiple timepoints, treatments and tissues by Michael Love 43k

Yes, if you think the entire time course can be modified by tissue effects then you would include another set of interaction terms. I re…

Comment: How to visualize these pathways using pathview by Guido Hooiveld ★ 4.1k

FYI: a similar, if not identical issue has been reported before (`pathview` has problems visualizing some pathways, but not all). You likel…

Comment: Why select top highly expressed genes based on normalized counts, but then plot by Quang NN ▴ 10

I see. Thank you ATpoint!

Votes

Answer: Unable to install nloptr

Answer: ensembldb for Homo Sapiens organism containing superfluous SYMBOL genes?

C: How does edgeR cpm function calculate log(CPM) values?

Answer: Selection of correct coefficients or contrasts in DESeq2

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