Bioconductor Missing data

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2.5k

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Missing Data TCGAbiolinks Kaplan-Meier LIHC Xenabrowser

6.0 years ago jam526 • 0

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3.5k

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deseq2 sample_table missing data

updated 6.8 years ago by g.wang2 • 0 • written 10.6 years ago by anpham ▴ 70

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1.9k

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deseq2 paired samples missing data multiple treatments

updated 6.9 years ago by Michael Love 43k • written 6.9 years ago by greg.deakin • 0

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3.4k

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limma missing data methylation normalization

updated 8.0 years ago by Aaron Lun ★ 29k • written 8.0 years ago by mheydarpour ▴ 10

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3.0k

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limma contrast missing data lmfit makecontrasts

updated 8.2 years ago by Gordon Smyth 53k • written 8.2 years ago by wewolski ▴ 10

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1.1k

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pcamethods missing data

8.6 years ago eli-sava • 0

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9.1k

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software error rnaseq wgcna missing data

9.9 years ago • updated 9.5 years ago dvillarlozano ▴ 10

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1.3k

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cellhts2 upload missing data

updated 9.8 years ago by Joseph Barry ▴ 160 • written 9.8 years ago by zmorehouse • 0

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1.3k

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missing data filter

updated 9.9 years ago by James W. MacDonald 68k • written 9.9 years ago by rgescudero • 0

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1.9k

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missing data missing value imputation impute MICE bioconductor

10.1 years ago svlachavas ▴ 840

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1.7k

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software error missing data workflowinstall

10.5 years ago anoll2 • 0

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1.6k

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bayseq missing data

10.5 years ago k.w.lau • 0

12 results • Page 1 of 1

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Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112

Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

we can investigate this issue. thank you for bringing it to our attention

Comment: deseq2 filter the low counts by Michael Love 43k

> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…

Comment: deseq2 filter the low counts by empty_mt • 0

Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …

Comment: deseq2 filter the low counts by Michael Love 43k

Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering

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Bioconductor 3.22 Released!

Comment: "Watched Tags" are being erased rather than updated

Comment: deseq2 filter the low counts

Answer: DESeq2 interactions

Answer: Important: Bioconductor Release 3.22 Delayed

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