Showing : mroast • reset
2
votes
6
replies
1.7k
views
Appropriate use of the function mroast to find KEGG pathways for differential expression
mroast limma pathway analysis differential gene expression affymetrix
9.1 years ago svlachavas ▴ 830
6
votes
10
replies
1.8k
views
Possible implementation of roast/mroast for testing common DE patterns across two different experiments
gene set testing roast mroast differential gene expression bioconductor
9.0 years ago svlachavas ▴ 830
8
votes
4
replies
5.6k
views
Differences between edgeR's and limma+voom's implementation of camera/roast/romer
limma edger mroast romer camera
updated 8.3 years ago by ★ 13k • written 8.3 years ago by ▴ 180
0
votes
4
replies
1.6k
views
Argument gene.data for the correct implementation of fuction pathview of the pathview package
mroast limma pathview pathway analysis
updated 9.1 years ago by ★ 1.6k • written 9.1 years ago by ▴ 830
4
votes
4
replies
1.4k
views
Interpreting mroast results
mroast limma roast
5.5 years ago SB • 0
7
votes
9
replies
3.0k
views
limma's mroast and romer
romer mroast limma
updated 8.6 years ago by 50k • written 8.6 years ago by ▴ 10
0
votes
3
replies
1.4k
views
ROAST using curated gene sets
edgeR mroast roast
7.9 years ago lattalic • 0
0
votes
3
replies
1.9k
views
Barcodeplot limma function using two logFC lists
limma edger barcodeplot gene set enrichment mroast
updated 6.3 years ago by 50k • written 6.3 years ago by • 0
3
votes
3
replies
932
views
Conditions for using Fry
limma mroast fry
updated 5.8 years ago by 50k • written 5.8 years ago by • 0
3
votes
4
replies
843
views
Is number of rotations dependent on number of gene sets in mroast?
limma mroast
updated 5.8 years ago by 50k • written 5.8 years ago by • 0
0
votes
2
replies
926
views
mroast/fry with gene weights for most or all genes
limma mroast fry
updated 5.7 years ago by 50k • written 5.7 years ago by ▴ 180
2
votes
3
replies
1.4k
views
Perform limma based gene-set testing for a two-group comparison in a microarray dataset regarding specific biological processes
limma agilent microarrays mroast fry gene tests gene set testing
updated 5.6 years ago by 50k • written 5.6 years ago by ▴ 830
1
vote
2
replies
1.3k
views
Explanation of mroast results for specific biological processes and error with barcodeplot function with a microarray dataset
limma mroast agilent microarrays GO.BP barcodeplot
updated 5.6 years ago by 50k • written 5.6 years ago by ▴ 830
2
votes
2
replies
1.3k
views
limma roast/mroast with patient-matched pre-/post- treatment
limma roast mroast block
updated 7.9 years ago by ★ 7.9k • written 7.9 years ago by • 0
5
votes
11
replies
1.8k
views
Appropriate methodologies for using various inputs(GOs, gene-sets) for mroast testing
limma mroast GSEA GO illumina human ht-12 v4
updated 8.9 years ago by ★ 28k • written 8.9 years ago by ▴ 830
7
votes
10
replies
1.7k
views
Possible TF binding site enrichment analysis through mroast and conversion problems
TF binding site analysis bioconductor mroast limma promoter analysis
updated 8.9 years ago by ★ 28k • written 8.9 years ago by ▴ 830
7
votes
6
replies
3.2k
views
Interpretation of mroast gene set analysis in R and appropriate use of the function barcode plot regarding a microarray dataset
limma mroast barcodeplot KEGG gene set testing
updated 8.5 years ago by 50k • written 8.5 years ago by ▴ 830
2
votes
2
replies
1.2k
views
Running Roast with Gene Symbols of Curated Genes
mroast roast gene set gene set analysis edgeR
updated 7.9 years ago by 65k • written 7.9 years ago by • 0
0
votes
2
replies
1.5k
views
using camera/roast/romer to find enriched gene sets from proteomics data
limma proteomics camera mroast romer
updated 7.6 years ago by 50k • written 7.6 years ago by • 0
0
votes
6
replies
1.8k
views
Different results obtained from mroast and camera from Deseq2 counts
limma camera mroast tximport
updated 6.9 years ago by 65k • written 6.9 years ago by ▴ 40
0
votes
1
reply
1.5k
views
Graphic representation of mroast results
mroast visualization
8.9 years ago Elena Serrano ▴ 30
0
votes
0
replies
629
views
Interpretation of mroast p-value results for gene set testing of specific molecular signatures using microarray data
mroast camera gene set testing
3.6 years ago svlachavas ▴ 830
22 results • Page 1 of 1
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Comment: ChAMP installation issue by e1271094 • 0
I apologise for any inconvenience. I have successfully installed the ChAMP package. However, I am now encountering a new error: myLoad <- …
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0
Yes, blockLength=200000, and seg=seg. I am concerned about the inter-feature distance of features. I generated this plot for various bloc…
Answer: Can I trust the differential expression analysis when the two groups overlap on by Michael Love 42k
Can you use `vst` instead of `rlog` and increase to 1000 or 2000 genes? I'm wondering if there's a way to characterize these 7 samples. …
Comment: Can I trust the differential expression analysis when the two groups overlap on by BioinfGuru ▴ 30
I think I am about to run into the same issue with my data, so I'll be interested to read peoples opinions on this also i.e. when the group…
Answer: How to approach time course RNAseq data? Seeing 80% DE genes in timepoint groups by Gordon Smyth 50k
The MDS plot shows that the time points are hugely different and whereas the replicate samples appear very consistent, with very low variat…
Votes
Answer: Error EPICv2 ChAMP
Comment: Store output of matchPWM()
Answer: Store output of matchPWM()
Answer: Store output of matchPWM()
Answer: ChipQC 'names' attribute [9] must be the same length as the vector [2]'
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