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network
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WGCNA: minModuleSize is not responding correctly
Network
minModuleSize
WGCNA
wgcna
2.0 years ago • updated 9 weeks ago
bioinformaticssrm2011
• 0
0
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0
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313
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News:
Online course: Network Analysis in Systems Biology with R/Bioconductor
SystemsBiology
Bioconductor
Network
6 months ago
info
▴ 10
0
votes
2
replies
1.6k
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using WGCNA, positive or negative corrlation between genes composing modules.
correlation
wgcna
network
updated 6 months ago by
mariakenneth147
• 0 • written 2.0 years ago by
pharamac
• 0
0
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1
reply
717
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WGCNA Soft Power
Normalization
DESeq2
Network
RNASeqData
updated 10 months ago by
ATpoint
★ 4.6k • written 10 months ago by
Ömür Koray
• 0
1
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1
reply
1.1k
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How to select subnetworks, or regions, with a certain number of nodes or edges with RCy3
Network
RCy3
updated 11 months ago by
alex.pico
▴ 30 • written 11 months ago by
David R
▴ 90
0
votes
2
replies
718
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StringDB: Cannot use payload mechanism to colour nodes
RNASeqData
STRINGdb
DifferentialExpression
GraphAndNetwork
Network
11 months ago
Luca
• 0
6 results • Page
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Comment: How to annotate a limma Elist raw class object with an annotation file
by
James W. MacDonald
67k
Oh right. My bad. Good for you though, figuring out that it's ENTREZID, not ENTREZGENE. You did a good job of reading the error message in …
Comment: Differential Expression Genes as Independent Variables
by
James W. MacDonald
67k
Both true, so a poor suggestion on my part. I am also unclear as to how one would use a single observation (the gene expression measures)…
Answer: How to annotate a limma Elist raw class object with an annotation file
by
giulia.gentile
• 0
Good afternoon, Thank you for your explanation and suggestion to overcome the issue by annotating directly from the genome-wide annotation…
Comment: scuttle::perFeatureQCMetrics runs very slow for big scRNA-seq data
by
Aaron Lun
★ 28k
IIRC loading ~million cells into memory took about 3-5 minutes, but that was with a rather slow filesystem (HDD on a HPC), so YMMV dependin…
Comment: Differential Expression Genes as Independent Variables
by
Gordon Smyth
52k
Does not allow mixed models. And is for a different purpose to what your aims seem to be: it's purely for prediction rather than for testin…
Votes
A: DESeq2 One-way ANOVA with 3 sample groups?
conumee with Infinium MethylationEPIC v2.0
A: How to bin a GRanges to small bins
C: How to bin a GRanges to small bins
C: How to bin a GRanges to small bins
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