Bioconductor Outlier

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568

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Outlier

updated 20 months ago by ATpoint ★ 4.5k • written 20 months ago by sanchita.bhattacharya • 0

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1.6k

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DESeq2 RNAseq outlier

updated 21 months ago by ATpoint ★ 4.5k • written 21 months ago by James • 0

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2.3k

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RNAseq DESeq2 outlier counts DE analysis

updated 4.5 years ago by Kevin Blighe ★ 4.0k • written 4.5 years ago by DcL-A • 0

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911

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deseq2 outlier normalization removal

updated 4.7 years ago by Michael Love 42k • written 4.7 years ago by knholm • 0

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7.2k

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deseq2 rnaseq PCA hierarchical clustering outlier

8.0 years ago • updated 7.9 years ago wd ▴ 30

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1.7k

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rnaseq outlier statistics batch effect

updated 8.4 years ago by Gordon Smyth 51k • written 8.4 years ago by grastalt27 • 0

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1.5k

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arrayQualityMetrics Microarray Outlier

updated 9.0 years ago by Wolfgang Huber ★ 13k • written 9.0 years ago by horcsct ▴ 10

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4.7k

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DESeq2 outlier RNASeq

updated 9.9 years ago by Michael Love 42k • written 9.9 years ago by kenneth.daily • 0

8 results • Page 1 of 1

Recent ...

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Comment: Merge Replicates vs Mixed Model by abadgerw • 0

@gabrielhoffman any insight?

Comment: makeContrastsDream for Interaction by abadgerw • 0

@gabrielhoffman any insight?

Comment: ColData and ERROR: rows did not converge in beta, labelled in mcols(object)$beta by Michael Love 42k

That is the rows that did converge.

Answer: Is my time course analysis with DESeq2 valid? by Michael Love 42k

For choosing the correct statistical design, I recommend working with a local statistician or someone familiar with linear models in R. I h…

Comment: biomaRt rnorvegicus_gene_ensembl not available anymore by Mike Smith ★ 6.6k

Unfortunately I received this update from the Ensembl Helpdesk on 2024-11-14: > Unfortunately, the fix is taking longer than expected and …

Votes

A: Recommendations for combining multiple 10x runs into one SingleCellExperiment

Answer: [How to construct a model.matrix ]

Answer: Handling biological replicates in DESeq2

Comment: biomaRt rnorvegicus_gene_ensembl not available anymore

biomaRt rnorvegicus_gene_ensembl not available anymore

Awards • All

Popular Question to Michael Stadler ▴ 350

Scholar to ATpoint ★ 4.5k

Commentator to James W. MacDonald 67k

Popular Question to Stefano Mangiola ▴ 20