Bioconductor Overlap

Showing : overlap • reset

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4.1k

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overrepresentation overlap R hypergeometric

updated 3.1 years ago by ATpoint ★ 5.0k • written 3.1 years ago by charles.foster ▴ 180

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984

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Givz heatmap overlap combine information

5.5 years ago kris.petrini • 0

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2.9k

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genomicranges r overlap

updated 5.5 years ago by Kevin Blighe ★ 4.0k • written 5.5 years ago by Grinch • 0

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6.5k

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genomicranges overlap intersect findoverlaps

7.8 years ago Caroline Grisbach Meissner ▴ 10

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2.5k

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wgcna multiple data sets overlap

updated 8.5 years ago by Peter Langfelder ★ 3.0k • written 8.5 years ago by 2323982403 ▴ 60

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1.8k

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overlap genomicranges range

8.9 years ago julrodr80 ▴ 30

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3.0k

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genomicfeatures genomicranges cds overlap

updated 9.9 years ago by Michael Lawrence ★ 11k • written 9.9 years ago by madsheilskov ▴ 10

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1.8k

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genomicfeatures genomicranges cds overlap

updated 3.9 years ago by balajee • 0 • written 9.9 years ago by madsheilskov ▴ 10

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2.7k

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overlap snps granges iranges

updated 11.1 years ago by Michael Lawrence ★ 11k • written 11.1 years ago by anastasiya-terskih ▴ 10

9 results • Page 1 of 1

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Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112

Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

we can investigate this issue. thank you for bringing it to our attention

Comment: deseq2 filter the low counts by Michael Love 43k

> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…

Comment: deseq2 filter the low counts by empty_mt • 0

Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …

Comment: deseq2 filter the low counts by Michael Love 43k

Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering

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Bioconductor 3.22 Released!

Comment: "Watched Tags" are being erased rather than updated

Comment: deseq2 filter the low counts

Answer: DESeq2 interactions

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