Showing : overlap • reset
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Properly constructing a hypergeometric test
overrepresentation overlap R hypergeometric
updated 2.1 years ago by ★ 4.5k • written 2.1 years ago by ▴ 160
0
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0
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770
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How to overlap heatmaps on Gviz?
Givz heatmap overlap combine information
4.5 years ago kris.petrini • 0
5
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2.3k
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How to extract positions present in one genomic ranges object and not the other?
genomicranges r overlap
updated 4.5 years ago by ★ 4.0k • written 4.5 years ago by • 0
2
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8
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GenomicRanges: identify overlapping regions, get intersection between each overlapping pair and add gene coordinates (start, end, strand and ids)
genomicranges overlap intersect findoverlaps
6.8 years ago Caroline Grisbach Meissner ▴ 10
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2
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2.1k
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WGCNA multiple data sets overlapping analysis
wgcna multiple data sets overlap
updated 7.5 years ago by ★ 3.0k • written 7.5 years ago by ▴ 60
1
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5
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1.5k
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Obtain the specific range that overlap
overlap genomicranges range
8.0 years ago julrodr80 ▴ 30
2
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10
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2.5k
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How to find the amino acid codons corresponding to a subset of a range of genomic positions
genomicfeatures genomicranges cds overlap
updated 9.0 years ago by ★ 11k • written 9.0 years ago by ▴ 10
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1.5k
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How to find the amino acid codons corresponding to a subset of a range of genomic positions
genomicfeatures genomicranges cds overlap
updated 3.0 years ago by • 0 • written 9.0 years ago by ▴ 10
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Overlap the snps
overlap snps granges iranges
updated 10.1 years ago by ★ 11k • written 10.1 years ago by ▴ 10
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Comment: CleanUpRNAseq with a GTF that is missing mitochondria annotation data by rcreed • 0
The updated version worked well on my data. Thank you!
Answer: DE analysis on Single cell RNA Seq time course data (using pseudotime) with 5 di by James W. MacDonald 67k
The two contrasts at the bottom are identical but for the sign of the logFC, so you should expect the same results (except for flipped sign…
Comment: Identical samples after deseq2 batch effect removal by Michael Love 42k
Oh, i didn't realize there is another method in the mix here. I would not necessarily trust this "batch correction" method, and suspect o…
Comment: Identifying potentially associated gene set to drug response using GSVA by Kent • 0
Hi @robertc thanks for the reply. I should have explained to you the context first. I am testing over a hundred drugs on patient samples (s…
Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification by James W. MacDonald 67k
You can easily answer this question yourself. ``` > library(BiocPkgTools) Loading required package: htmlwidgets > depdf <- buildPkgDe…
Votes
Answer: CleanUpRNAseq with a GTF that is missing mitochondria annotation data
Answer: CleanUpRNAseq with a GTF that is missing mitochondria annotation data
A: TopGO: How to retrieve the gene list related to a GO ID ?
A: Error in DESeqDataSet : some values in assay are not integers
A: correcting the batch effects in Limma and SVA
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