Bioconductor Overlap

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2.6k

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overrepresentation overlap R hypergeometric

updated 2.1 years ago by ATpoint ★ 4.5k • written 2.1 years ago by charles.foster ▴ 160

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766

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Givz heatmap overlap combine information

4.5 years ago kris.petrini • 0

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2.3k

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genomicranges r overlap

updated 4.5 years ago by Kevin Blighe ★ 4.0k • written 4.5 years ago by Grinch • 0

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5.7k

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genomicranges overlap intersect findoverlaps

6.8 years ago Caroline Grisbach Meissner ▴ 10

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2.1k

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wgcna multiple data sets overlap

updated 7.5 years ago by Peter Langfelder ★ 3.0k • written 7.5 years ago by 2323982403 ▴ 60

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1.5k

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overlap genomicranges range

7.9 years ago julrodr80 ▴ 30

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2.5k

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genomicfeatures genomicranges cds overlap

updated 8.9 years ago by Michael Lawrence ★ 11k • written 8.9 years ago by madsheilskov ▴ 10

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1.5k

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genomicfeatures genomicranges cds overlap

updated 3.0 years ago by balajee • 0 • written 8.9 years ago by madsheilskov ▴ 10

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2.4k

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overlap snps granges iranges

updated 10.1 years ago by Michael Lawrence ★ 11k • written 10.1 years ago by anastasiya-terskih ▴ 10

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Answer: Combining RNAseq and microarray data using edgeR/limma-voom by James W. MacDonald 67k

No, that's not a good idea at all. You should be doing a meta-analysis with these data rather than trying to combine like that. `GeneMeta` …

Answer: GOstats kegg analysis in wheat - help - none of the objects in the first column by James W. MacDonald 67k

Check the help page for `KEGGFrame`. Your columns are out of order.

Comment: Question about using LRT test for time course experiments with DESeq2 by James W. MacDonald 67k

You are testing the interaction, so you are asking for those genes that change at any time *differently, depending on the treatment*. If co…

Comment: DESeq Input from Salmon + tximport/tximeta by LuciaNhu • 0

Thank you both. Special thanks from Prof. Michael Love. It's rare to find tool authors who respond to users so quickly and supportively. Ma…

Comment: Question about using LRT test for time course experiments with DESeq2 by Denise • 0

Hi James, Yes, I understand that the p-values are with respect to the full versus reduced model comparison. However, the "genes that cha…

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Comment: DESeq Input from Salmon + tximport/tximeta

Answer: DESeq Input from Salmon + tximport/tximeta

Answer: featureCounts segmentation fault with large chromosomes

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Popular Question to Assa Yeroslaviz ★ 1.5k