Bioconductor Overlap

Showing : overlap • reset

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4.1k

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overrepresentation overlap R hypergeometric

updated 3.0 years ago by ATpoint ★ 5.0k • written 3.0 years ago by charles.foster ▴ 180

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959

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Givz heatmap overlap combine information

5.4 years ago kris.petrini • 0

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2.9k

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genomicranges r overlap

updated 5.4 years ago by Kevin Blighe ★ 4.0k • written 5.4 years ago by Grinch • 0

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6.5k

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genomicranges overlap intersect findoverlaps

7.7 years ago Caroline Grisbach Meissner ▴ 10

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2.4k

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wgcna multiple data sets overlap

updated 8.4 years ago by Peter Langfelder ★ 3.0k • written 8.4 years ago by 2323982403 ▴ 60

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1.8k

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overlap genomicranges range

8.8 years ago julrodr80 ▴ 30

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2.9k

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genomicfeatures genomicranges cds overlap

updated 9.8 years ago by Michael Lawrence ★ 11k • written 9.8 years ago by madsheilskov ▴ 10

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1.7k

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genomicfeatures genomicranges cds overlap

updated 3.9 years ago by balajee • 0 • written 9.8 years ago by madsheilskov ▴ 10

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2.7k

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overlap snps granges iranges

updated 11.0 years ago by Michael Lawrence ★ 11k • written 11.0 years ago by anastasiya-terskih ▴ 10

9 results • Page 1 of 1

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Comment: Help with defining groups by Phinney, Brett ▴ 10

I got it working , thank you!!!

Comment: Check removeBatchEffect effectiveness by massimo • 0

I would kindly ask for additional support. When not including the design_timepoint argument in removeBatchEffect and thus keeping the inter…

Comment: Error Loading Experiment from SimBenchData Package by ksankaran • 0

Aha, that was it! The object was class Seurat, but I didn't have it installed. After installing, everything works as expected.

Comment: Streamlining the computing time for MiloDE p-value correction in large dataset? by ATpoint ★ 5.0k

Is a method that is so computationally expensive really beneficial and necessary? You seem to have biological replication, don't you, so ps…

Answer: NA values for DESeq2 p-values and adjusted p-values using large sample sizes by ATpoint ★ 5.0k

Outliers without replacement, independent filtering or all-zero counts for that gene. That's the three options that trigger NAs https://bio…

Votes

Comment: Check removeBatchEffect effectiveness

Gene expression associated with continuous (quantitative) traits (Limma/edgeR/correlation)

Answer: Error Loading Experiment from SimBenchData Package

Comment: incomplete imputation of missing values with LEA impute() function

Answer: Expected memory usage for analyzing large single-cell seq datasets (> 450,000 ce

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