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overlap
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2
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8
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5.3k
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GenomicRanges: identify overlapping regions, get intersection between each overlapping pair and add gene coordinates (start, end, strand and ids)
genomicranges
overlap
intersect
findoverlaps
6.3 years ago
Caroline Grisbach Meissner
▴ 10
2
votes
10
replies
2.2k
views
How to find the amino acid codons corresponding to a subset of a range of genomic positions
genomicfeatures
genomicranges
cds
overlap
updated 8.4 years ago by
Michael Lawrence
★ 11k • written 8.4 years ago by
madsheilskov
▴ 10
4
votes
3
replies
2.1k
views
Overlap the snps
overlap
snps
granges
iranges
updated 9.6 years ago by
Michael Lawrence
★ 11k • written 9.6 years ago by
anastasiya-terskih
▴ 10
0
votes
2
replies
1.9k
views
WGCNA multiple data sets overlapping analysis
wgcna
multiple data sets
overlap
updated 7.0 years ago by
Peter Langfelder
★ 3.0k • written 7.0 years ago by
2323982403
▴ 60
5
votes
2
replies
1.9k
views
How to extract positions present in one genomic ranges object and not the other?
genomicranges
r
overlap
updated 4.0 years ago by
Kevin Blighe
★ 3.9k • written 4.0 years ago by
Grinch
• 0
0
votes
2
replies
1.7k
views
Properly constructing a hypergeometric test
overrepresentation
overlap
R
hypergeometric
updated 19 months ago by
ATpoint
★ 4.1k • written 19 months ago by
charles.foster
▴ 160
0
votes
1
reply
1.4k
views
How to find the amino acid codons corresponding to a subset of a range of genomic positions
genomicfeatures
genomicranges
cds
overlap
updated 2.4 years ago by
balajee
• 0 • written 8.4 years ago by
madsheilskov
▴ 10
1
vote
5
replies
1.3k
views
Obtain the specific range that overlap
overlap
genomicranges
range
7.4 years ago
julrodr80
▴ 30
0
votes
0
replies
634
views
How to overlap heatmaps on Gviz?
Givz
heatmap
overlap
combine information
4.0 years ago
kris.petrini
• 0
9 results • Page
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Comment: Deseq2 and Normalization of RNA sequencing data
by
kcarey
• 0
Noise in terms of expression...to make sure that the information reported is not due to artifacts and actually expression. When I had FPKM …
Answer: NEED FOR NESSASORY HELP
by
Gordon Smyth
50k
Is this quesion related to your earlier question? https://support.bioconductor.org/p/9157127/ If you've already done an edgeR analysis, yo…
Answer: Gene-by-sample covariates in limma
by
Gordon Smyth
50k
Your first method would be valid if, instead of taking ratios, you instead used the differences between the log-transformed 13C and 12C int…
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
by
Gordon Smyth
50k
You have discovered something that I have pointed out many times on this forum. fgsea does not implement the classic GSEA method published …
Comment: Once again a "Model matrix not full rank"
by
James W. MacDonald
65k
In that case both time and treatment are identical things, so choose one and go with it.
Votes
Bioconductor 3.19 is Released!
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
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