Bioconductor PlotMA

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plotMA ggplot2 plotPCA DESeq2

updated 8 months ago by Michael Love 42k • written 8 months ago by sara.jacobson • 0

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649

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matrixsubset DESeq2 plotMA

updated 3.2 years ago by Michael Love 42k • written 3.2 years ago by l.troxler ▴ 10

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927

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deseq2 plotMA rnaseq community analysis asymmetry

updated 4.3 years ago by Michael Love 42k • written 4.3 years ago by chaco001 • 0

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988

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agilent single channel plotMA background correction

updated 6.0 years ago by Gordon Smyth 51k • written 6.0 years ago by CantExitVIM ▴ 10

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1.1k

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deseq2 plotMA rnaseq logfoldchange

updated 6.3 years ago by Michael Love 42k • written 6.3 years ago by ap_vc21 • 0

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2.7k

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deseq2 plotma

6.8 years ago Yvan Wenger ▴ 50

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rstudio r plotMA

7.0 years ago g.k • 0

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4.9k

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deseq2 rnaseq plotMA deseq rna-seq

updated 8.2 years ago by Michael Love 42k • written 8.2 years ago by sjs0282 • 0

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3.8k

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limma plotMA

updated 8.8 years ago by Gordon Smyth 51k • written 8.8 years ago by Lisa Cohen ▴ 50

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2.4k

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normalization deseq2 plotMA meanSDplot

8.8 years ago aravenscraft • 0

10 results • Page 1 of 1

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Comment: Trouble reading samplesheet in with diffbind to create dba by Mallory • 0

Thank you for your reply! There mustve been something wierd going on with my peak formats as you pointed out. I recalled all the peaks and …

Answer: Trouble reading samplesheet in with diffbind to create dba by Anthony • 0

I was struggling with this today too. For me it happened because my peak files were not in the correct format. The "10 elements" refers to …

Comment: gds in GEOmetadb 2023-06-26 version is empty by Frederico Moraes Ferreira ▴ 100

Try axel -n 20 https://gbnci.cancer.gov/geo/GEOmetadb.sqlite.gz

Comment: Most enriched pathway is not expressed when modifying universe parameter by James W. MacDonald 66k

The default for `enrichGO` is to subset to those with a p-value<0.05. You don't adjust that default argument, so you shouldn't have any GO …

Answer: In a 3 group DEG analysis with three batches, can I use 1 group in all three bat by Michael Love 42k

You can compare A and C thanks to the sharing of samples from B across 1, 2 and 3.

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Answer: How to do DESeq2 on Kallisto Data

Comment: Most enriched pathway is not expressed when modifying universe parameter

Time-course, comparison of two groups

Answer: Behaviour of featureCounts when quantifying multi-mapping reads

Answer: GESA with certain gene list returns no result with human genom, but many result

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Popular Question to Dan Tenenbaum ★ 8.2k