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plotMDS
•
reset
1
vote
2
replies
1.5k
views
loading scores using plotMDS in limma
plotMDS
limma
2.2 years ago • updated 2.1 years ago
Cen
• 0
1
vote
3
replies
4.9k
views
Making MDS plot
plotMDS
limma
updated 2.3 years ago by
Gordon Smyth
53k • written 2.3 years ago by
liujy4
• 0
2
votes
2
replies
2.0k
views
Make samples symbols bigger in PCA / MDS analysis with plotMDS function
plotMDS
PCA
RNASeq
MDS
updated 3.5 years ago by
Gordon Smyth
53k • written 3.5 years ago by
Raito92
▴ 60
2
votes
2
replies
1.7k
views
plotMDS dimensions bug
limma
plotMDS
4.1 years ago
jamie.gearing
▴ 60
2
votes
8
replies
5.3k
views
MDS Plot help in edgeR
edgeR
plotmds
differential gene expression
MDS
mdsplot
updated 6.7 years ago by
Gordon Smyth
53k • written 6.7 years ago by
ilovesuperheroes1993
• 0
0
votes
1
reply
1000
views
Visualization of analysis of multiple cell lines
plotMDS
Cell lines
limma
updated 7.0 years ago by
Gordon Smyth
53k • written 7.0 years ago by
Alexander Azarian
▴ 30
0
votes
0
replies
1.3k
views
Using log2FC distance matrix in Boot.Phylo to create bootstrapped trees
tree
bootstrap
dgelist
plotmds
7.5 years ago
Larry K.
• 0
3
votes
7
replies
7.1k
views
Limma PlotMDS: what values should be used?
limma
edger
plotmds
tmm
masigpro
7.8 years ago
dacaba.92
▴ 10
4
votes
6
replies
2.1k
views
EdgeR: Replicate samples diverge in MDS plot
edger
plotmds
8.0 years ago
fawazfebin
▴ 60
3
votes
1
reply
2.4k
views
column nubering plotMDS
edger
plotmds
updated 8.0 years ago by
Aaron Lun
★ 29k • written 8.0 years ago by
mictadlo
▴ 10
1
vote
1
reply
2.0k
views
Inspection of batch effect correction success with ComBat in R, regarding a merged dataset comprised of 4 different batches
affymetrix microarrays
sva
combat sva
batch effect
plotMDS
updated 9.1 years ago by
Jeff Leek
▴ 650 • written 9.1 years ago by
svlachavas
▴ 840
0
votes
0
replies
1.4k
views
Is it possible to make some spheres around groups of points (plot3d) and measure distances between them?
rgl
plot3d
plotmds
9.4 years ago
Adam
• 0
12 results • Page
1 of 1
Recent ...
Replies
Answer: Sharing a collection of datasets in ExperimentHub
by
shepherl
4.2k
107 packages would be a lot! It is certainly possible (and recommended) to implement one package that utilizes ExperimentHub for controlli…
Comment: GO.db and others package Download failure
by
James W. MacDonald
68k
Also, you never need to use anything but `BiocManager::install` to install any package, which has the beneficial side effect of ensuring th…
Comment: GO.db and others package Download failure
by
James W. MacDonald
68k
Yes. Your packages have odd Y version numbers (where the version is X.Y.Z). That means they are devel packages (release versions have even …
Comment: GO.db and others package Download failure
by
Skyler
• 0
Am I using Bioc-devel?
Comment: GO.db and others package Download failure
by
James W. MacDonald
68k
Is there a reason to use Bioc-devel? If not, you should be using the release version (which I am, and which installs `GO.db` without compla…
Votes
Comment: readDNAStringSet with non DNA characters
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
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