Bioconductor PlotMDS

Showing : plotMDS • reset

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1.7k

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plotMDS limma

2.5 years ago Cen • 0

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5.2k

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plotMDS limma

updated 2.6 years ago by Gordon Smyth 53k • written 2.6 years ago by liujy4 • 0

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2.1k

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plotMDS PCA RNASeq MDS

updated 3.9 years ago by Gordon Smyth 53k • written 3.9 years ago by Raito92 ▴ 60

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1.9k

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limma plotMDS

4.5 years ago jamie.gearing ▴ 60

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5.5k

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edgeR plotmds differential gene expression MDS mdsplot

updated 7.1 years ago by Gordon Smyth 53k • written 7.1 years ago by ilovesuperheroes1993 • 0

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1.1k

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plotMDS Cell lines limma

updated 7.4 years ago by Gordon Smyth 53k • written 7.4 years ago by Alexander Azarian ▴ 30

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1.4k

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tree bootstrap dgelist plotmds

7.9 years ago Larry K. • 0

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7.4k

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limma edger plotmds tmm masigpro

8.1 years ago dacaba.92 ▴ 10

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2.3k

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edger plotmds

8.3 years ago fawazfebin ▴ 60

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2.5k

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edger plotmds

updated 8.3 years ago by Aaron Lun ★ 29k • written 8.3 years ago by mictadlo ▴ 10

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2.2k

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affymetrix microarrays sva combat sva batch effect plotMDS

updated 9.4 years ago by Jeff Leek ▴ 650 • written 9.4 years ago by svlachavas ▴ 840

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1.5k

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rgl plot3d plotmds

9.8 years ago Adam • 0

12 results • Page 1 of 1

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Comment: Confirm that OpenStats will not be archived (pryr dependency) by Marina • 0

Thank you!

Comment: AnnotationForge makeOrgPackage rsqlite_send_query error by ansley.r.burtch • 0

Hi! I am sure you are well into your career now and haven't worked on this for a while, but I wanted to let you know this is still helping …

Comment: limpa analysis advice by Gordon Smyth 53k

I prefer for limpa to work on precursor intensities, because my understanding is that precursors are the basic unit of identification and q…

Answer: Confirm that OpenStats will not be archived (pryr dependency) by shepherl 4.3k

As long as OpenStats is building cleanly and all needed stated dependencies are on CRAN or Bioconductor, OpenStats will not be archived. I…

Comment: Lowly expressed genes reported as significant when using lfcThreshold in DESeq by Michael Love 43k

Yes, I find that the LFC shrinkage and its corresponding stat `svalue` if you use lfcShrink with a threshold often returns more reliable ge…

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Comment: limpa analysis advice

C: AnnotationForge makeOrgPackage rsqlite_send_query error

Answer: Limpa Pipeline Order

Answer: Array weights in dpcDE

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