Showing : plotMDS • reset
1
vote
2
replies
1.3k
views
loading scores using plotMDS in limma
plotMDS limma
17 months ago • updated 16 months ago Cen • 0
1
vote
3
replies
3.5k
views
Making MDS plot
plotMDS limma
updated 18 months ago by 52k • written 18 months ago by • 0
2
votes
2
replies
1.6k
views
Make samples symbols bigger in PCA / MDS analysis with plotMDS function
plotMDS PCA RNASeq MDS
updated 2.8 years ago by 52k • written 2.8 years ago by ▴ 60
2
votes
2
replies
1.5k
views
plotMDS dimensions bug
limma plotMDS
3.4 years ago jamie.gearing ▴ 60
2
votes
8
replies
4.6k
views
MDS Plot help in edgeR
edgeR plotmds differential gene expression MDS mdsplot
updated 6.0 years ago by 52k • written 6.0 years ago by • 0
0
votes
1
reply
874
views
Visualization of analysis of multiple cell lines
plotMDS Cell lines limma
updated 6.3 years ago by 52k • written 6.3 years ago by ▴ 30
0
votes
0
replies
1.1k
views
Using log2FC distance matrix in Boot.Phylo to create bootstrapped trees
tree bootstrap dgelist plotmds
6.8 years ago Larry K. • 0
3
votes
7
replies
6.6k
views
Limma PlotMDS: what values should be used?
limma edger plotmds tmm masigpro
7.0 years ago dacaba.92 ▴ 10
4
votes
6
replies
1.8k
views
EdgeR: Replicate samples diverge in MDS plot
edger plotmds
7.2 years ago fawazfebin ▴ 60
3
votes
1
reply
2.2k
views
column nubering plotMDS
edger plotmds
updated 7.3 years ago by ★ 28k • written 7.3 years ago by ▴ 10
1
vote
1
reply
1.8k
views
Inspection of batch effect correction success with ComBat in R, regarding a merged dataset comprised of 4 different batches
affymetrix microarrays sva combat sva batch effect plotMDS
updated 8.3 years ago by ▴ 650 • written 8.3 years ago by ▴ 840
0
votes
0
replies
1.3k
views
Is it possible to make some spheres around groups of points (plot3d) and measure distances between them?
rgl plot3d plotmds
8.7 years ago Adam • 0
12 results • Page 1 of 1
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Comment: ChAMP.DMR error - Error in makeGenomicRatioSetFromMatrix by O'Brien • 0
Consult the ChAMP.DMR documentation for more information on supported array types and expected data formats: https://bioconductor.org/packa…
Answer: combining raw counts and estimated counts by O'Brien • 0
It is possible to combine raw counts from TCGA and estimated counts from GEO datasets (Kalisto pseudoalignment) while mitigating batch effe…
Comment: Packages don't update, but no error or warning is thrown by neighsanlo • 0
This is useful information.
Comment: Perform gene set enrichment analysis using fgsea on two conditions that don't ha by freemanmclaughlin9969289 • 0
Tools such as Pathway Analysis with Deweighting of Overlapping Genes ([block blast][1]) or Gene Set Enrichment Analysis for Single Cell RNA…
Comment: How to get around the warning message: mzR has been built against a different Rc by Nan • 0
Hello, I was wondering if you were able to resolve this issue? I've recently encountered a similar problem and would like to ask for your a…
Votes
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio
C: edgeR and lack of counts ID on CPM matrix
A: DESeq2 Following RSEM
A: importing RSEM data into DESeq2
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