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plotMDS
•
reset
1
vote
2
replies
1.3k
views
loading scores using plotMDS in limma
plotMDS
limma
18 months ago
Cen
• 0
1
vote
3
replies
3.9k
views
Making MDS plot
plotMDS
limma
updated 20 months ago by
Gordon Smyth
52k • written 20 months ago by
liujy4
• 0
2
votes
2
replies
1.7k
views
Make samples symbols bigger in PCA / MDS analysis with plotMDS function
plotMDS
PCA
RNASeq
MDS
updated 2.9 years ago by
Gordon Smyth
52k • written 2.9 years ago by
Raito92
▴ 60
2
votes
2
replies
1.6k
views
plotMDS dimensions bug
limma
plotMDS
3.5 years ago
jamie.gearing
▴ 60
2
votes
8
replies
4.7k
views
MDS Plot help in edgeR
edgeR
plotmds
differential gene expression
MDS
mdsplot
updated 6.1 years ago by
Gordon Smyth
52k • written 6.1 years ago by
ilovesuperheroes1993
• 0
0
votes
1
reply
899
views
Visualization of analysis of multiple cell lines
plotMDS
Cell lines
limma
updated 6.4 years ago by
Gordon Smyth
52k • written 6.4 years ago by
Alexander Azarian
▴ 30
0
votes
0
replies
1.1k
views
Using log2FC distance matrix in Boot.Phylo to create bootstrapped trees
tree
bootstrap
dgelist
plotmds
6.9 years ago
Larry K.
• 0
3
votes
7
replies
6.7k
views
Limma PlotMDS: what values should be used?
limma
edger
plotmds
tmm
masigpro
7.2 years ago
dacaba.92
▴ 10
4
votes
6
replies
1.9k
views
EdgeR: Replicate samples diverge in MDS plot
edger
plotmds
7.4 years ago
fawazfebin
▴ 60
3
votes
1
reply
2.3k
views
column nubering plotMDS
edger
plotmds
updated 7.4 years ago by
Aaron Lun
★ 28k • written 7.4 years ago by
mictadlo
▴ 10
1
vote
1
reply
1.8k
views
Inspection of batch effect correction success with ComBat in R, regarding a merged dataset comprised of 4 different batches
affymetrix microarrays
sva
combat sva
batch effect
plotMDS
updated 8.5 years ago by
Jeff Leek
▴ 650 • written 8.5 years ago by
svlachavas
▴ 840
0
votes
0
replies
1.3k
views
Is it possible to make some spheres around groups of points (plot3d) and measure distances between them?
rgl
plot3d
plotmds
8.8 years ago
Adam
• 0
12 results • Page
1 of 1
Recent ...
Replies
Comment: WGCNA coupled with differential expression analysis: question about baseline mod
by
hetaf16210
• 0
@[slope][1] If feasible, consider conducting both analyses. Start with a pooled analysis to identify broad patterns, then conduct separate …
Comment: DESeq2 adujsted p-value cutoff seemingly not working
by
980linnet
• 0
Stuck on DESeq2 with alpha=.05 for padj cutoff. Can't seem to get the differential expression analysis to stick the landing - it's like try…
Comment: internal error in trio library when trying to use lfmm() in LEA package
by
PW
• 0
>ERROR: unable to open file D://anole_geno.snmf/K1/run1/anole_geno_r1.1.Q. Please, check that the name of the file you provided is correct.…
Comment: DESeq2 adujsted p-value cutoff seemingly not working
by
Guilherme
• 0
Thank you for your answer So the proper way to conduct the analysis is to put the filters in the results() function and later filter the da…
Comment: DiffBind - observation that the default union overlap is actually a gap of 1 bp
by
Ian D.
▴ 70
Please can you comment on this @rory.
Votes
A: how to extract Granges not overlapping with other ganges?
DESeq2 1.20.0 lfcshrink function
A: LIMMA on RT-PCR data
Answer: Efficiently working with HDF5-backed SingleCellExperiments
Efficiently working with HDF5-backed SingleCellExperiments
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ramiro.barrantes
▴ 10
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Vincent J. Carey, Jr.
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Gordon Smyth
52k
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James W. MacDonald
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