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Showing :
plotMDS
•
reset
1
vote
2
replies
781
views
loading scores using plotMDS in limma
plotMDS
limma
9 months ago • updated 8 months ago
Cen
• 0
1
vote
3
replies
1.8k
views
Making MDS plot
plotMDS
limma
updated 10 months ago by
Gordon Smyth
50k • written 10 months ago by
liujy4
• 0
2
votes
2
replies
1.2k
views
Make samples symbols bigger in PCA / MDS analysis with plotMDS function
plotMDS
PCA
RNASeq
MDS
updated 2.1 years ago by
Gordon Smyth
50k • written 2.1 years ago by
Raito92
▴ 60
2
votes
2
replies
1.2k
views
plotMDS dimensions bug
limma
plotMDS
2.7 years ago
jamie.gearing
▴ 60
2
votes
8
replies
3.7k
views
MDS Plot help in edgeR
edgeR
plotmds
differential gene expression
MDS
mdsplot
updated 5.3 years ago by
Gordon Smyth
50k • written 5.3 years ago by
ilovesuperheroes1993
• 0
0
votes
1
reply
725
views
Visualization of analysis of multiple cell lines
plotMDS
Cell lines
limma
updated 5.6 years ago by
Gordon Smyth
50k • written 5.6 years ago by
Alexander Azarian
▴ 30
0
votes
0
replies
916
views
Using log2FC distance matrix in Boot.Phylo to create bootstrapped trees
tree
bootstrap
dgelist
plotmds
6.1 years ago
Larry K.
• 0
3
votes
7
replies
5.7k
views
Limma PlotMDS: what values should be used?
limma
edger
plotmds
tmm
masigpro
6.4 years ago
dacaba.92
▴ 10
4
votes
6
replies
1.5k
views
EdgeR: Replicate samples diverge in MDS plot
edger
plotmds
6.6 years ago
fawazfebin
▴ 60
3
votes
1
reply
2.0k
views
column nubering plotMDS
edger
plotmds
updated 6.6 years ago by
Aaron Lun
★ 28k • written 6.6 years ago by
mictadlo
▴ 10
1
vote
1
reply
1.6k
views
Inspection of batch effect correction success with ComBat in R, regarding a merged dataset comprised of 4 different batches
affymetrix microarrays
sva
combat sva
batch effect
plotMDS
updated 7.7 years ago by
Jeff Leek
▴ 650 • written 7.7 years ago by
svlachavas
▴ 830
0
votes
0
replies
1.1k
views
Is it possible to make some spheres around groups of points (plot3d) and measure distances between them?
rgl
plot3d
plotmds
8.0 years ago
Adam
• 0
12 results • Page
1 of 1
Recent ...
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Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
James W. MacDonald
65k
So basically you are using HTML markup to set your subscripts and whatnot, and then `element_markdown` does the rest.
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
James W. MacDonald
65k
Oh snap. Foiled again. Here it is with spaces & ge ; and & lt ;
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
James W. MacDonald
65k
Oh LOL. My markdown got edited by the markdown editor! What is between the p and 50 in the first case is the HTML for greater than or equal…
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
James W. MacDonald
65k
Ah, good point. You could instead try ``` > library(ggtext) > keyvals.shape = c(rep(3,10), rep(2,8)) > names(keyvals.shape) = ifelse(keyva…
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
pl23
• 0
Hi, Yes, I've tried this, but I am not sure if it is possible to assign `bquote` values to the names of a vector. In particular, if I use…
Votes
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
Comment: biomaRt : No lock file for BiocFileCache
Answer: Cross-species analysis - how to compute the mid parent value?
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
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Gordon Smyth
50k
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Chris
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