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promoter
•
reset
0
votes
2
replies
1.1k
views
Failed to get promoters using promoters() in R 4.0.3.
promoter
GenomicRanges
rtracklayer
GRanges
2.7 years ago
Arslan
• 0
3
votes
6
replies
1.2k
views
Better way to find head to head GRanges?
promoter
updated 4.0 years ago by
Hervé Pagès
16k • written 4.0 years ago by
Charles Plessy
▴ 180
1
vote
3
replies
1.2k
views
Obtain coordinates of 5' upstream region up to closest coding region
r
granges
promoter
updated 5.2 years ago by
Hervé Pagès
16k • written 5.2 years ago by
eggrandio
• 0
0
votes
0
replies
910
views
CAGEr get TSS in bed file
TSS
promoter
cage
cager
5.5 years ago
bharata1803
▴ 60
0
votes
0
replies
1.3k
views
GenomicFeatures: How to extract a gene's upstream region of TSS up to the end position of the flanking (nearby) gene.
genomicranges
genomicfeatures
promoter
upstream_flank
5.6 years ago
Wojeff
• 0
0
votes
3
replies
1.8k
views
How to handle multi-TSS genes in Repitools?
repitools
promoter
tss
annotation
6.2 years ago
Ryan C. Thompson
★ 7.9k
1
vote
5
replies
1.9k
views
Extract genomic features from a TxDb-like object
TxDB
genomicfeatures
promoter
getpromoterseq
updated 6.2 years ago by
Hervé Pagès
16k • written 6.2 years ago by
rbenel
▴ 40
1
vote
2
replies
1.1k
views
DEXseq for alternate promoter usage
dexseq
promoter
utr
updated 7.9 years ago by
Alejandro Reyes
★ 1.9k • written 7.9 years ago by
joan.hooper
• 0
1
vote
6
replies
1.8k
views
problem creating txdb object and bsgenome for solanum pennellii
bsgenome
txdb
promoter
updated 8.3 years ago by
Martin Morgan
25k • written 8.3 years ago by
sekawaiwai2006
▴ 20
2
votes
2
replies
2.6k
views
using the "promoters" function with an "OrganismDb" to generate "GRanges" with "REFSEQ" rather than UCSC gene names
promoter
granges
refseq
ucsc
organismdb
updated 8.5 years ago by
Robert Castelo
★ 3.3k • written 8.5 years ago by
efoss
▴ 10
2
votes
2
replies
1.4k
views
promoter definition in VariantAnnotation
VariantAnnotation
promoter
drosophila melanogaster
updated 9.3 years ago by
Valerie Obenchain
★ 6.8k • written 9.3 years ago by
lidia.mateo
▴ 30
11 results • Page
1 of 1
Recent ...
Replies
Comment: deseq2 results
by
swbarnes2
★ 1.4k
Ask the people who made the libraires if there was anything unusual in the QC of the outlier sample. Try to figure out what biologically …
Comment: Can't post a question containing code?
by
NATASHA
• 0
did you find a solution? I´m having the same problem
Comment: error
by
NATASHA
• 0
Please ignore, i didnt copy all the scrip
Comment: Extremely small p-values using Limma for proteomic data
by
James W. MacDonald
65k
If you ever find yourself using the `@` function, you should reconsider what you are doing. There are vanishingly small instances when an e…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
42k
Here is some example code <https://gist.github.com/mikelove/cbbc84634b6854c865cb5eb08ad9b245>
Votes
A: AIC-like measure for DESeq2
Comment: Extremely small p-values using Limma for proteomic data
Comment: Log-cpm values from limma
Comment: Log-cpm values from limma
Comment: deseq2 results
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maria.soler
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Pietro
▴ 40
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neilzhao
▴ 30
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to
ATpoint
★ 4.1k
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Michael Love
42k
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