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pwmenrich
•
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0
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644
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How to interpret difference statistic from the output of the motifDiffEnrichment() function in the PWMEnrich package?
PWMEnrich
5.3 years ago
intregen
• 0
0
votes
0
replies
733
views
makeBackground error message "Sequence only contain N's"
pwmenrich
6.0 years ago
gdeniz
• 0
0
votes
1
reply
783
views
subsetting PWMLognBackground object in the PWMEnrich package
PWMEnrich
6.1 years ago
amanda.joy.price
• 0
0
votes
0
replies
683
views
PWMEnruch: Error in getPromoters(organism)
r
pwmenrich
6.3 years ago
prp291
• 0
0
votes
1
reply
1.8k
views
Convert HOMER motif matrix to pfm?
homer
pwmenrich
updated 7.7 years ago by
Ou, Jianhong
★ 1.3k • written 7.7 years ago by
sarah.blackstone7734
• 0
0
votes
0
replies
981
views
question about motif enrichment analysis using PWMenrich
PWMenrich
7.7 years ago
sekawaiwai2006
▴ 20
2
votes
3
replies
1.7k
views
visualing pwm motif on a DNAstring
pwmenrich
dnastringset
updated 8.1 years ago by
Robert Stojnic
▴ 50 • written 8.1 years ago by
sekawaiwai2006
▴ 20
0
votes
0
replies
1.3k
views
Import motifs in .meme format in MotifDB
motfdb
pwmenrich
meme
8.1 years ago
enricoferrero
▴ 660
0
votes
3
replies
1.4k
views
motif scanning using position frequncy matrix of motif in a given set of DNAstringset sequnces?.
motifdb
matchpwm
motif
pwmenrich
pwm
8.4 years ago
vinod.acear
▴ 50
0
votes
1
reply
2.2k
views
non-numeric argument to binary operator error with makeBackground() in PWMEnrich
pwmenrich
MotifDB
updated 8.5 years ago by
Robert Stojnic
▴ 50 • written 8.5 years ago by
elliott77
• 0
2
votes
1
reply
1.1k
views
[PWMEnrich] Enrichment p-values on human sequences
pwmenrich
log
updated 8.7 years ago by
Robert Stojnic
▴ 50 • written 8.7 years ago by
enricoferrero
▴ 660
1
vote
3
replies
1.4k
views
getBackgroundFrequencies for Arabidopsis
pwmenrich
bsgenome
8.7 years ago
oliwindram
▴ 10
0
votes
5
replies
2.5k
views
Motif enrichment analysis: Error in transfac format and background frequencies from BSGenome
BSgenome
convert
BSgenome
PWMEnrich
MotifDb
updated 9.6 years ago by
Robert Stojnic
▴ 80 • written 9.6 years ago by
deepti anand
▴ 50
0
votes
0
replies
778
views
PWMEnrich::sequenceReport() and 'res' global variable
PWMEnrich
PWMEnrich
9.8 years ago
enricoferrero
▴ 660
0
votes
8
replies
1.6k
views
plotpfm has been removed in PWMEnrich?
PWMEnrich
PWMEnrich
updated 10.4 years ago by
Robert Stojnic
▴ 80 • written 10.4 years ago by
Fabrice Tourre
▴ 970
0
votes
1
reply
1.2k
views
PWMEnrich binding site position
PWMEnrich
PWMEnrich
updated 10.6 years ago by
Robert Stojnic
▴ 50 • written 10.6 years ago by
Guest User
★ 13k
16 results • Page
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Comment: Deseq2. decontXcounts not integers. Useful alternative?
by
ATpoint
★ 4.0k
I do not know this decontamination tool you use but generally: If these counts are basically "corrected" raw counts in the sense that they'…
Answer: Improving the design matrices vignette in RNAseq123
by
Gordon Smyth
50k
Thanks to Shian Su, we have confirmed that the problem in the design matrices vignette html is caused by a bug in knitr 1.44 (to do with sp…
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
winwater0928
• 0
Thank you for your comment! I'll review my code from top to bottom.
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
James W. MacDonald
65k
So basically you are using HTML markup to set your subscripts and whatnot, and then `element_markdown` does the rest.
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
James W. MacDonald
65k
Oh snap. Foiled again. Here it is with spaces & ge ; and & lt ;
Votes
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
Comment: biomaRt : No lock file for BiocFileCache
Answer: Cross-species analysis - how to compute the mid parent value?
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
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