Showing : qpcr • reset
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HTqPCR
qPCR GO GLAD HTqPCR qPCR GO GLAD HTqPCR
updated 11.9 years ago by ★ 2.0k • written 11.9 years ago by ▴ 40
1
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7
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1.6k
views
EDGE: Persistent lrt() and odp() command pi0est() error due to low p values
edge qpcr qvalue
7.2 years ago • updated 6.3 years ago joe.d.moore.ii • 0
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4
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1.5k
views
Reading in data with HTqPCR
qPCR Cancer cycle HTqPCR qPCR Cancer cycle HTqPCR
14.0 years ago • updated 13.9 years ago Heidi Dvinge ★ 2.0k
0
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2
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1.9k
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reading in data in ReadqPCR
qPCR Annotation HTqPCR qPCR Annotation HTqPCR
11.2 years ago Guest User ★ 13k
0
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5
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1.7k
views
SCAN.UPC for Illumina arrays?
RNASeq qPCR affy oligo frma RNASeq qPCR affy oligo frma
updated 10.5 years ago by ▴ 590 • written 10.5 years ago by ★ 4.2k
0
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2
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1.7k
views
Bacterial genomics
Sequencing Microarray qPCR genomes Sequencing Microarray qPCR genomes
updated 13.7 years ago by 16k • written 13.8 years ago by ▴ 30
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4
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1.2k
views
HTqPCR questions
qPCR HTqPCR qPCR HTqPCR
updated 13.3 years ago by ▴ 330 • written 13.3 years ago by ★ 2.0k
0
votes
12
replies
1.8k
views
htqPCR question
miRNA qPCR Normalization limma miRNA qPCR Normalization limma
updated 14.0 years ago by ★ 2.0k • written 14.0 years ago by ▴ 810
0
votes
4
replies
2.4k
views
HTqPCR to analyze Fluidigm 96.96 Dynamic Array data
qPCR HTqPCR qPCR HTqPCR
updated 13.9 years ago by ★ 2.0k • written 13.9 years ago by ▴ 30
0
votes
4
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1.0k
views
HTqPCR and factorial design
qPCR HTqPCR qPCR HTqPCR
updated 14.3 years ago by ★ 2.0k • written 14.3 years ago by ▴ 810
0
votes
3
replies
1.5k
views
RNASeq, differential expression between group, and large variance within groups
RNASeq qPCR edgeR DESeq RNASeq qPCR edgeR DESeq
updated 13.2 years ago by ★ 6.0k • written 13.2 years ago by 50k
0
votes
3
replies
1.1k
views
Manual creation of Affybatch object to study highthrouput qPCR experiments.
miRNA qPCR affy miRNA qPCR affy
updated 12.6 years ago by ▴ 300 • written 12.6 years ago by ★ 13k
0
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2
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952
views
how to 'bootstrap' expression data?
qPCR GO qPCR GO
updated 16.6 years ago by ★ 6.5k • written 16.6 years ago by ▴ 410
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2
replies
1.2k
views
Advise on setting up a non-specific filter for differential expression
qPCR qPCR
13.7 years ago Tobias Straub ▴ 430
0
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6
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1.5k
views
HT qPCR - error in scale rank invariant
miRNA qPCR miRNA qPCR
updated 13.3 years ago by ★ 2.0k • written 13.3 years ago by ▴ 810
0
votes
17
replies
2.7k
views
[Bioc] RNAseq less sensitive than microarrays? Is it a statistical issue?
Sequencing RNASeq Microarray qPCR Coverage edgeR DESeq Sequencing RNASeq Microarray qPCR
updated 11.0 years ago by ★ 13k • written 11.0 years ago by ▴ 330
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2
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2.2k
views
Fwd: help
qPCR qPCR
updated 11.7 years ago by ★ 2.0k • written 11.7 years ago by ▴ 30
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4
replies
1.1k
views
HTqPCR only works for 384 qPCR plates
qPCR qPCR
updated 14.1 years ago by ★ 2.0k • written 14.1 years ago by ▴ 810
0
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3
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993
views
HTqPCR and limma and factorial design with no replicates
Microarray qPCR Classification limma HTqPCR ASSIGN Microarray qPCR Classification limma
updated 14.3 years ago by ★ 6.0k • written 14.3 years ago by ▴ 810
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2
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1.0k
views
Advise on setting up a non-specific filter for differential expression
qPCR qPCR
13.7 years ago Lucia Peixoto ▴ 330
0
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5
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1.5k
views
dataset dim for siggenes
qPCR limma siggenes
updated 9.7 years ago by 65k • written 9.7 years ago by ▴ 100
0
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1
reply
1.2k
views
deseq2 for pair-wise analysis
qPCR qPCR
updated 9.7 years ago by 42k • written 9.7 years ago by ★ 13k
1
vote
3
replies
2.4k
views
ddCt calculation using bioconductor package
ddct qPCR
updated 2.9 years ago by ▴ 60 • written 9.1 years ago by ▴ 40
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votes
1
reply
1.2k
views
R: Degradation plots - Affy package
Transcription qPCR Genetics probe affy Transcription qPCR Genetics probe affy
updated 17.7 years ago by ▴ 360 • written 17.7 years ago by ▴ 10
0
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2
replies
1.5k
views
HTqPCR : readCtData problem?
miRNA qPCR HTqPCR miRNA qPCR HTqPCR
13.5 years ago Heidi Dvinge ★ 2.0k
0
votes
1
reply
938
views
normalization usinf the delta Ct method
qPCR Normalization qPCR Normalization
updated 13.7 years ago by ★ 13k • written 13.7 years ago by ▴ 810
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2
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1.3k
views
questions concerning quantile normalization in HTqPCR
miRNA qPCR miRNA qPCR
updated 13.6 years ago by ★ 2.0k • written 13.7 years ago by ▴ 810
0
votes
2
replies
2.2k
views
First time use of limma for two-color agilent array analysis
qPCR limma GeneSpring qPCR limma GeneSpring
updated 10.2 years ago by 65k • written 10.2 years ago by ▴ 30
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2
replies
1.6k
views
creating a qPCRset from Fluidigm 96*96 arrays in HTqPCR
qPCR qPCR
updated 10.2 years ago by ▴ 150 • written 10.2 years ago by ▴ 50
1
vote
1
reply
1.8k
views
Are the logFC confidence intervals returned by topTable adjusted for multiple comparisons?
Microarray qPCR limma
updated 9.6 years ago by 50k • written 9.7 years ago by ▴ 30
1
vote
2
replies
1.6k
views
qRT-PCR Sample Maximization software analysis and proper experimental design advice
qPCR Sample Maximization Analysis Experimental Design qRT-PCR
updated 9.0 years ago by 50k • written 9.0 years ago by ▴ 450
0
votes
2
replies
2.0k
views
HTqPCR problem with creation of qPCRset
qPCR HTqPCR qPCR HTqPCR
updated 11.2 years ago by 65k • written 11.2 years ago by ▴ 20
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1
reply
2.2k
views
Bioconductor Digest, Vol 120, Issue 12
Microarray qPCR Coverage Annotation Pathways Visualization Cancer Breast Organism affy
11.2 years ago Matthew Thornton ▴ 350
0
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1
reply
929
views
Normalization of array leads to decrease in number of differentially expressed genes
qPCR Normalization qPCR Normalization
updated 11.8 years ago by ▴ 430 • written 11.8 years ago by ▴ 290
0
votes
1
reply
884
views
HTqPCR Normalization
qPCR qPCR
updated 11.8 years ago by ▴ 300 • written 11.8 years ago by ▴ 10
0
votes
1
reply
1.3k
views
replicating ReadqPCR
qPCR qPCR
updated 11.2 years ago by ▴ 300 • written 11.2 years ago by ★ 13k
0
votes
9
replies
1.5k
views
htqPCR question
miRNA qPCR limma miRNA qPCR limma
updated 14.0 years ago by ▴ 810 • written 14.0 years ago by ★ 2.0k
0
votes
1
reply
803
views
clusterCt {HTqPCR}
qPCR qPCR
updated 12.2 years ago by ★ 2.0k • written 12.2 years ago by ▴ 290
0
votes
1
reply
1.1k
views
HTqPCR and limma and factorial design with no replicates
Microarray qPCR Classification limma HTqPCR ASSIGN Microarray qPCR Classification limma
updated 14.3 years ago by ★ 6.0k • written 14.3 years ago by ▴ 810
0
votes
1
reply
997
views
HTqPCR
qPCR limma HTqPCR qPCR limma HTqPCR
12.0 years ago • updated 11.9 years ago Heidi Dvinge ★ 2.0k
0
votes
5
replies
1.7k
views
HTqPCR problem
qPCR qPCR
updated 11.9 years ago by ▴ 200 • written 11.9 years ago by ▴ 860
0
votes
2
replies
748
views
Expression levels of individual affymetrix probes
qPCR probe qPCR probe
updated 16.5 years ago by 65k • written 16.5 years ago by ▴ 410
0
votes
1
reply
1.1k
views
HTqPCR
qPCR PROcess HTqPCR qPCR PROcess HTqPCR
12.7 years ago • updated 12.6 years ago Heidi Dvinge ★ 2.0k
0
votes
1
reply
842
views
Testing biased microarray data
qPCR limma qPCR limma
updated 13.1 years ago by ★ 3.7k • written 13.1 years ago by ▴ 370
0
votes
2
replies
1.5k
views
Compatibility of Biorad cfx files to HTqPCR?
qPCR HTqPCR qPCR HTqPCR
updated 13.1 years ago by ★ 2.0k • written 13.1 years ago by ▴ 10
0
votes
1
reply
1.3k
views
gcrma vs rma
Microarray qPCR probe ROC limma gcrma Microarray qPCR probe ROC limma gcrma
updated 13.7 years ago by ▴ 260 • written 13.7 years ago by ▴ 330
0
votes
1
reply
1.1k
views
PCR efficiency correction with HTqPCR
qPCR GO Prostate HTqPCR qPCR GO Prostate HTqPCR
updated 12.7 years ago by ★ 2.0k • written 12.7 years ago by ▴ 20
0
votes
4
replies
1.4k
views
HTqPCR problems
qPCR GO Preprocessing GLAD HTqPCR qPCR GO Preprocessing GLAD HTqPCR
updated 11.8 years ago by ▴ 340 • written 11.9 years ago by ★ 2.0k
0
votes
1
reply
1.4k
views
Talk & Poster - Final Call - qPCR 2009 Event
SNP qPCR Normalization Visualization Regression Cancer probe PROcess microRNA SNP qPCR
15.4 years ago qPCR Platform - the reference in real-t… ▴ 170
0
votes
1
reply
4.4k
views
EdgeR vs voom, what to consider when deciding which to use
RNASeq qPCR edgeR RNASeq qPCR edgeR
updated 11.1 years ago by ★ 13k • written 11.1 years ago by ▴ 330
50 results • Page 1 of 1
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Replies
Comment: Cannot connect to ExperimentHub server by Jiayu • 0
Many thanks and it also resolved the same issue for me!
Comment: Help with running egsea() by Chris • 0
I tried egsea.ma and got this error: gsa = egsea.ma(numeric_matrix, vector_group, probe_annotation, contrasts = contrast_matrix, gs.an…
Comment: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call by angelathuynh5 • 0
Thank you for your response. To clarify, the process of making a heatmap performs rowscaling so it takes the value - (mean/std). And to res…
Comment: Method to find pathways different between 2 groups by Gordon Smyth 50k
sigPathway is another method that does not account for inter-gene correlation and which gives inflated significance, as we showed in our 20…
Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu by James W. MacDonald 65k
I doubt you have that many contrasts. I think that is probably the number of rows. What does `dim(fit)` return (and `head(fit$coef)`)?
Votes
A: Error in DESeqDataSet : some values in assay are not integers
Answer: Cannot connect to ExperimentHub server
Answer: confused with tximport counts abundance using salmon input
Answer: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call
Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu
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