Showing : rcy3 • reset
3
votes
7
replies
1.3k
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"Degree values are the same for all nodes in a network imported from WGCNA to Cytoscape using RCy3. Seeking insights and potential causes."
Cytoscape RCy3 Networkvisualization WGCNA
12 months ago Ortega-C ▴ 10
3
votes
4
replies
1.4k
views
Exporting graphNEL into Cytoscape using RCy3 fails with 'arguments imply differing number of rows'
RCy3 Cytoscape Rgraphviz GOstats
5.0 years ago Matthew Thornton ▴ 360
2
votes
3
replies
1.3k
views
Aggregating genes from multiple GSE's, ranking them, then building a PPI network.
GEOquery CancerData limma RCy3 CancerInSilico
updated 2.5 years ago by ★ 13k • written 2.5 years ago by ▴ 50
1
vote
3
replies
1.3k
views
loadTableData function from RCy3 returns "Failed to load data: Provided key columns do not contain any matches"
Cytoscape Pathways Wikipathways rWikiPathways RCy3
3.5 years ago • updated 3.4 years ago Emilia ▴ 30
2
votes
2
replies
425
views
Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(paste("networks", net.suid, "tables", tbl, sep = "/"), : object 're…
RCy3
11 days ago • updated 6 days ago Matthew Thornton ▴ 360
1
vote
2
replies
889
views
RCy3 Cytoscape package question
rcy3
updated 3.4 years ago by ▴ 20 • written 4.4 years ago by ▴ 10
1
vote
1
reply
870
views
How to select subnetworks, or regions, with a certain number of nodes or edges with RCy3
Network RCy3
updated 4 months ago by ▴ 20 • written 5 months ago by ▴ 90
1
vote
1
reply
288
views
Going back to default settings in RCy3
Cytoscape RCy3 RCy
updated 4 months ago by ▴ 20 • written 5 months ago by ▴ 90
1
vote
1
reply
628
views
how to call an app from Cytoscape using R?
RCy3
updated 16 months ago by ▴ 20 • written 16 months ago by ▴ 30
1
vote
1
reply
327
views
Cytohubba in RCY3
RCy3 Cytohubba
updated 4 months ago by ▴ 20 • written 4 months ago by ▴ 10
0
votes
1
reply
755
views
Importing Newick trees in Cytoscape by conversion to igraph via RCy3
RCy3 Cytoscape R Newick Bioconductor
updated 3.4 years ago by ▴ 20 • written 3.8 years ago by • 0
11 results • Page 1 of 1
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Answer: Not able to install any Bioconductor 3.18 package [unable to access index] by shepherl 3.9k
An outage was reported at the location we store the Bioconductor archives. We are in process of temporarily activating a different backup …
Answer: unable to access bioconductor packages - qvalue installation failed... by shepherl 3.9k
An outage was reported at the location we store the Bioconductor archives. We are in process of temporarily activating a different backup …
Comment: Get gene symbols for a set of hg19 coordinates by pcantalupo ▴ 10
Now why didn't I think of that? I had tunnel vision thinking I needed to use an annotation package. Thank you ATpoint!
Comment: Not able to install any Bioconductor 3.18 package [unable to access index] by Konstantin • 0
It works with "Germany (Gottingen)"! Thanks!
Comment: Not able to install any Bioconductor 3.18 package [unable to access index] by mgdrnl • 0
I solved the problem installing the latest R version (4.4.0)
Votes
Comment: miRTarRnaseq library
Answer: Get gene symbols for a set of hg19 coordinates
Answer: Get gene symbols for a set of hg19 coordinates
Comment: recount3 problem downloading data from source sra
Not able to install any Bioconductor 3.18 package [unable to access index]
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