Bioconductor Refseq

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1.1k

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refseq Bioconductor conversion

4.8 years ago heiko_kin ▴ 60

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828

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RefSeq Chromosome Mutalyzer

5.4 years ago heiko_kin ▴ 60

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2.7k

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tximport Gene IDs txdb RefSeq Salmon

updated 5.6 years ago by Michael Love 43k • written 5.6 years ago by holmkn • 0

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3.4k

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edgeR ENEMBL RefSeq

updated 6.5 years ago by Gordon Smyth 53k • written 6.5 years ago by mzillur • 0

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3.1k

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genomicfeatures maketxdbfromucsc refseq

updated 9.1 years ago by Hervé Pagès 16k • written 9.1 years ago by Sebastien Vigneau ▴ 10

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4.4k

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ncbi refseq maketxdbfromgff fetchExtendedChromInfoFromUCSC genomeinfodb

updated 9.6 years ago by Hervé Pagès 16k • written 9.7 years ago by gokcen.eraslan ▴ 10

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3.5k

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promoter granges refseq ucsc organismdb

updated 9.8 years ago by Robert Castelo ★ 3.4k • written 9.8 years ago by efoss ▴ 10

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4.2k

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refseq annotationhub

updated 10.0 years ago by Martin Morgan 25k • written 10.0 years ago by dalloliogm ▴ 50

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2.0k

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customprodb dbsnp refseq varianttools

updated 10.2 years ago by xiaojing.wang ▴ 50 • written 10.2 years ago by kristenbeck527 • 0

9 results • Page 1 of 1

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Comment: Can I set the normalizationFactors of DEseq2 object as 1 after using RUVg? by Michael Love 43k

I moved your post from an "answer" to a "comment". I don't know about `offst()` function, what is the scale or direction, or whether you a…

Comment: Average biological replicates in RNA-seq by boczniak767 ▴ 740

@atpoint Should I first standardise data and then average replicates?

Comment: 3-factor DESeq2 trime-series analysis by gogeni5529 • 0

Thans you @swbarnes2 for the answer. I can see why trying to include all three parameters might be difficult to interpret. But we're inte…

Comment: 3-factor DESeq2 trime-series analysis by swbarnes2 ★ 1.4k

What does your PCA look like? A lot of times, I find that different cell lines are so different from each other, that they should not be d…

Comment: Can I set the normalizationFactors of DEseq2 object as 1 after using RUVg? by yongjie.wang • 0

Thanks for your reply. " normFactors <- exp(-1 * offst(set2)) normFactors <- normFactors / exp(rowMeans(log(normFactors))) normalizat…

Votes

Answer: Limpa Pipeline Order

A: How barcode-plot enrichment is calculated?

Answer: ROAST compare results with complex design

How to account for solvent controls in DESeq2 when comparing follicular vs luteal phase?

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Popular Question to Assa Yeroslaviz ★ 1.5k