Bioconductor Refseq

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1.1k

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refseq Bioconductor conversion

4.9 years ago heiko_kin ▴ 60

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859

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RefSeq Chromosome Mutalyzer

5.5 years ago heiko_kin ▴ 60

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2.8k

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tximport Gene IDs txdb RefSeq Salmon

updated 5.7 years ago by Michael Love 43k • written 5.7 years ago by holmkn • 0

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3.4k

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edgeR ENEMBL RefSeq

updated 6.6 years ago by Gordon Smyth 53k • written 6.6 years ago by mzillur • 0

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3.1k

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genomicfeatures maketxdbfromucsc refseq

updated 9.3 years ago by Hervé Pagès 16k • written 9.3 years ago by Sebastien Vigneau ▴ 10

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4.5k

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ncbi refseq maketxdbfromgff fetchExtendedChromInfoFromUCSC genomeinfodb

updated 9.8 years ago by Hervé Pagès 16k • written 9.8 years ago by gokcen.eraslan ▴ 10

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3.6k

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promoter granges refseq ucsc organismdb

updated 9.9 years ago by Robert Castelo ★ 3.4k • written 9.9 years ago by efoss ▴ 10

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4.3k

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refseq annotationhub

updated 10.1 years ago by Martin Morgan 25k • written 10.1 years ago by dalloliogm ▴ 50

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2.0k

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customprodb dbsnp refseq varianttools

updated 10.3 years ago by xiaojing.wang ▴ 50 • written 10.3 years ago by kristenbeck527 • 0

9 results • Page 1 of 1

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Answer: Issue with Soft-Thresholding in WGCNA by misty.chickadee.vckc • 0

Hi Maria, your detailed explanation is super helpful! The NA power estimate in WGCNA can be tricky. I've sometimes seen that when the data …

Comment: Interpretation of output of AffyRNAdeg and hist commands by debasainalsa • 0

When working with AffyRNAdeg output it helps to think of the table like browsing a HEYTEA Menu each row shows a feature of your slides and …

Comment: DESeq2 for candidate gene analysis by piffelpaff ▴ 20

thank you so much for answering Dr. Love!

Answer: DESeq2 for candidate gene analysis by Michael Love 43k

Your plan 1 is reasonable. Run DESeq2 on the whole dataset to obtain size factors and moderated dispersion estimates and then extract the u…

Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by James W. MacDonald 68k

Oh. ``` > z <- read10xCounts(c(tmpdir, tmpdir), mtx.class = "SVT_SparseMatrix", delayed = TRUE) > class(counts(z)) [1] "DelayedMatrix" att…

Votes

A: Multi-level experiments in Limma

Answer: Should voomWithQualityWeights still be used when the sample-specific weights var

Answer: DESeq2 for candidate gene analysis

DESeq2 for candidate gene analysis

Answer: DESeq2 for candidate gene analysis

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