Bioconductor Refseq

Showing : refseq • reset

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1.2k

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refseq Bioconductor conversion

5.2 years ago heiko_kin ▴ 60

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990

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RefSeq Chromosome Mutalyzer

5.8 years ago heiko_kin ▴ 60

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3.0k

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tximport Gene IDs txdb RefSeq Salmon

updated 6.0 years ago by Michael Love 43k • written 6.0 years ago by holmkn • 0

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3.5k

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edgeR ENEMBL RefSeq

updated 6.9 years ago by Gordon Smyth 53k • written 6.9 years ago by mzillur • 0

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3.2k

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genomicfeatures maketxdbfromucsc refseq

updated 9.6 years ago by Hervé Pagès 16k • written 9.6 years ago by Sebastien Vigneau ▴ 10

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4.9k

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ncbi refseq maketxdbfromgff fetchExtendedChromInfoFromUCSC genomeinfodb

updated 10.1 years ago by Hervé Pagès 16k • written 10.1 years ago by gokcen.eraslan ▴ 10

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3.8k

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promoter granges refseq ucsc organismdb

updated 10.2 years ago by Robert Castelo ★ 3.4k • written 10.2 years ago by efoss ▴ 10

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4.4k

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refseq annotationhub

updated 10.4 years ago by Martin Morgan 25k • written 10.4 years ago by dalloliogm ▴ 50

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2.1k

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customprodb dbsnp refseq varianttools

updated 10.6 years ago by xiaojing.wang ▴ 50 • written 10.6 years ago by kristenbeck527 • 0

9 results • Page 1 of 1

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Comment: Deseq2 DE analysis of host-pathogen samples (model separately or jointly?) by a2a2ddrhaa • 0

For those taking a break from the lab, the CT777 Game download https://ct7777.pk/ offers a high-performance entry into online mobile gaming…

Answer: Subsetting data verses contrasts [DESeq2]? by ATpoint ★ 5.0k

This has been asked many times before, please search for relevant posts. In short: Generally it is least tedious to not split the data and …

Comment: Bulk RNAseq analysis for by Mariami • 0

Thank you so much for your help! will try to proceed with the suggestion

Comment: Bulk RNAseq analysis for by Mariami • 0

Thank you for the explanation. I understand, although at the moment we are limited in our ability to increase N. My concern came from the o…

Answer: Bulk RNAseq analysis for by Gordon Smyth 53k

All three packages allow paired comparisons, where the clone is the "pair". limma moreover allows mixed models (just run `voomLmFit` with `…

Votes

Comment: Are transformed values from rlog /vst log2 normalized counts?

Are transformed values from rlog /vst log2 normalized counts?

Answer: Bulk RNAseq analysis for

Answer: DiffBind differential analysis

Answer: Limma-voom sample weights and impact on DEG numbers

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