Bioconductor Refseq

Showing : refseq • reset

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1.2k

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refseq Bioconductor conversion

5.1 years ago heiko_kin ▴ 60

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913

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RefSeq Chromosome Mutalyzer

5.7 years ago heiko_kin ▴ 60

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2.9k

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tximport Gene IDs txdb RefSeq Salmon

updated 5.9 years ago by Michael Love 43k • written 5.9 years ago by holmkn • 0

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3.5k

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edgeR ENEMBL RefSeq

updated 6.8 years ago by Gordon Smyth 53k • written 6.8 years ago by mzillur • 0

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3.2k

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genomicfeatures maketxdbfromucsc refseq

updated 9.4 years ago by Hervé Pagès 16k • written 9.4 years ago by Sebastien Vigneau ▴ 10

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4.7k

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ncbi refseq maketxdbfromgff fetchExtendedChromInfoFromUCSC genomeinfodb

updated 9.9 years ago by Hervé Pagès 16k • written 9.9 years ago by gokcen.eraslan ▴ 10

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3.7k

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promoter granges refseq ucsc organismdb

updated 10.1 years ago by Robert Castelo ★ 3.4k • written 10.1 years ago by efoss ▴ 10

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4.3k

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refseq annotationhub

updated 10.2 years ago by Martin Morgan 25k • written 10.2 years ago by dalloliogm ▴ 50

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2.1k

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customprodb dbsnp refseq varianttools

updated 10.5 years ago by xiaojing.wang ▴ 50 • written 10.5 years ago by kristenbeck527 • 0

9 results • Page 1 of 1

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Comment: blockwiseModule crashes in the end and doesn't generate modules by gexose2839 • 0

Sounds good. @[time][1] [1]: https://timeduration.github.io

Comment: PFAM formats changed - is it still possible to use this with ISA? by TikTsokaasocissalpc • 0

For mobile gaming enthusiasts, 3 Patti Lucky offers a seamless experience, unlike the frustration Harris faced with incompatible PFAM resul…

Answer: segfault in edgeR glmQLFit by Gordon Smyth 53k

Dear Mark, Thank you for providing a reproducible example. I confirm that I can reproduce the segfault myself on my own computer. The prob…

Answer: DESeq2 - how many surrogate variables from svaseq, use of lfcshrink by aqeel • 0

Discover the pinnacle of Brazilian Jiu Jitsu gear at [Dragon][1] GI. [1]: https://dragongi.com/

Comment: How does contrasts.fit do in limma to extract comparisons with a model having in by Gordon Smyth 53k

I refered you to the DiffVar package 11 months ago. Did you consider it? Your clarification makes it clear that your issue is not with lim…

Votes

C: DESeq2 Following RSEM

Upcoming Ensembl API and data access changes - new blog post available

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

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