Bioconductor Refseq

Showing : refseq • reset

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1.2k

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refseq Bioconductor conversion

5.1 years ago heiko_kin ▴ 60

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948

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RefSeq Chromosome Mutalyzer

5.8 years ago heiko_kin ▴ 60

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2.9k

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tximport Gene IDs txdb RefSeq Salmon

updated 6.0 years ago by Michael Love 43k • written 6.0 years ago by holmkn • 0

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3.5k

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edgeR ENEMBL RefSeq

updated 6.8 years ago by Gordon Smyth 53k • written 6.8 years ago by mzillur • 0

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3.2k

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genomicfeatures maketxdbfromucsc refseq

updated 9.5 years ago by Hervé Pagès 16k • written 9.5 years ago by Sebastien Vigneau ▴ 10

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4.8k

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ncbi refseq maketxdbfromgff fetchExtendedChromInfoFromUCSC genomeinfodb

updated 10.0 years ago by Hervé Pagès 16k • written 10.0 years ago by gokcen.eraslan ▴ 10

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3.7k

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promoter granges refseq ucsc organismdb

updated 10.2 years ago by Robert Castelo ★ 3.4k • written 10.2 years ago by efoss ▴ 10

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4.4k

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refseq annotationhub

updated 10.3 years ago by Martin Morgan 25k • written 10.3 years ago by dalloliogm ▴ 50

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2.1k

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customprodb dbsnp refseq varianttools

updated 10.5 years ago by xiaojing.wang ▴ 50 • written 10.5 years ago by kristenbeck527 • 0

9 results • Page 1 of 1

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Comment: Pairwise comparison of multiple groups with different base by ja569116 • 0

Hi @mikelove I have a similar situation, and I feel that I have interpreted the results in the wrong way. In my case I would like to identi…

Comment: Are individual-mouse-based statistics possible in CellChat? by TikTsossakaas33ocissalpc • 0

Questions about comparing groups and statistical significance highlight how data driven thinking matters across fields. In online mobile ga…

Comment: DESeq2 - how many surrogate variables from svaseq, use of lfcshrink by ja569116 • 0

Hi @atpoint Thanks for the information. Could you please expand on when to use adjusted p-values vs nominal p-values. My understanding was …

Answer: limpa analysis advice by Gordon Smyth 53k

It is actually very hard to estimate the DPC from observed data, because the curve is function of unobserved intensities rather than a func…

Answer: When to use edgeR or limma by Gordon Smyth 53k

The short answer is that we generally prefer edgeR for applications with lots of small counts and limma for complex designs with random eff…

Votes

Answer: When to use edgeR or limma

A: deseq2 - paired samples in 2 sequencing types with very different library sizes

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Popular Question to Lluís Revilla Sancho ▴ 760