Bioconductor Refseq

Showing : refseq • reset

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1.2k

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refseq Bioconductor conversion

5.0 years ago heiko_kin ▴ 60

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901

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RefSeq Chromosome Mutalyzer

5.7 years ago heiko_kin ▴ 60

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2.9k

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tximport Gene IDs txdb RefSeq Salmon

updated 5.9 years ago by Michael Love 43k • written 5.9 years ago by holmkn • 0

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3.5k

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edgeR ENEMBL RefSeq

updated 6.7 years ago by Gordon Smyth 53k • written 6.7 years ago by mzillur • 0

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3.2k

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genomicfeatures maketxdbfromucsc refseq

updated 9.4 years ago by Hervé Pagès 16k • written 9.4 years ago by Sebastien Vigneau ▴ 10

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4.7k

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ncbi refseq maketxdbfromgff fetchExtendedChromInfoFromUCSC genomeinfodb

updated 9.9 years ago by Hervé Pagès 16k • written 9.9 years ago by gokcen.eraslan ▴ 10

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3.6k

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promoter granges refseq ucsc organismdb

updated 10.1 years ago by Robert Castelo ★ 3.4k • written 10.1 years ago by efoss ▴ 10

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4.3k

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refseq annotationhub

updated 10.2 years ago by Martin Morgan 25k • written 10.2 years ago by dalloliogm ▴ 50

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2.1k

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customprodb dbsnp refseq varianttools

updated 10.4 years ago by xiaojing.wang ▴ 50 • written 10.4 years ago by kristenbeck527 • 0

9 results • Page 1 of 1

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Comment: Question about RE-agnostic mode for intact Hi-C and Micro-C normalization(HiCDCP by TikTsoksocissalpc • 0

Normalizing complex datasets like Hi C can be challenging, much like setting up a PC for optimal gaming performance. Just as careful tuning…

Comment: p.adjust BH Question by TikTsoksocissalpc • 0

Thanks for sharing your question about RMA limma analysis While working on your experiment, it s always helpful to have some background mu…

Answer: NUPOP usage by shepherl 4.2k

You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…

Comment: How can I correctly use phyloseq with Docker? by fnfgame • 0

In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …

Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150

Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?

Votes

C: DESeq2 Following RSEM

Upcoming Ensembl API and data access changes - new blog post available

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

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Popular Question to James W. MacDonald 68k