Bioconductor Refseq

Showing : refseq • reset

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985

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refseq Bioconductor conversion

4.0 years ago heiko_kin ▴ 60

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664

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RefSeq Chromosome Mutalyzer

4.6 years ago heiko_kin ▴ 60

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2.3k

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tximport Gene IDs txdb RefSeq Salmon

updated 4.8 years ago by Michael Love 43k • written 4.8 years ago by holmkn • 0

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3.1k

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edgeR ENEMBL RefSeq

updated 5.7 years ago by Gordon Smyth 51k • written 5.7 years ago by mzillur • 0

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2.8k

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genomicfeatures maketxdbfromucsc refseq

updated 8.4 years ago by Hervé Pagès 16k • written 8.4 years ago by Sebastien Vigneau ▴ 10

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3.9k

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ncbi refseq maketxdbfromgff fetchExtendedChromInfoFromUCSC genomeinfodb

updated 8.8 years ago by Hervé Pagès 16k • written 8.9 years ago by gokcen.eraslan ▴ 10

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3.0k

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promoter granges refseq ucsc organismdb

updated 9.0 years ago by Robert Castelo ★ 3.4k • written 9.0 years ago by efoss ▴ 10

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3.9k

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refseq annotationhub

updated 9.2 years ago by Martin Morgan 25k • written 9.2 years ago by dalloliogm ▴ 50

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1.8k

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customprodb dbsnp refseq varianttools

updated 9.4 years ago by xiaojing.wang ▴ 50 • written 9.4 years ago by kristenbeck527 • 0

9 results • Page 1 of 1

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Answer: Deseq2 res Function by Michael Love 43k

> Does this mean the young and KO groups were numerators and denominators in the analysis, respectively? Read over the vignette and work…

Answer: ANOVA like approach of edgeR by Gordon Smyth 51k

You need to clarify whether interactions are present for the two factors in your study. In the two factors do not interact, then the code y…

Answer: Create Illmina bead summary data by Gordon Smyth 51k

GenomeStudio produces IDAT files that you can read using the `read.idat` function in limma. That is the recommended way to read GenomeStudi…

Comment: Help with RSEM counts: do I transpose matrix? by NB • 0

OK thank you.

Comment: Help with RSEM counts: do I transpose matrix? by James W. MacDonald 67k

You can ask here, but please read the `DESeq2` vignette first, which should answer most questions.

Votes

Answer: Deseq2 res Function

Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification

Answer: ANOVA like approach of edgeR

Comment: ANOVA like approach of edgeR

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