Bioconductor Refseq

Showing : refseq • reset

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1.2k

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refseq Bioconductor conversion

5.0 years ago heiko_kin ▴ 60

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881

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RefSeq Chromosome Mutalyzer

5.6 years ago heiko_kin ▴ 60

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2.8k

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tximport Gene IDs txdb RefSeq Salmon

updated 5.8 years ago by Michael Love 43k • written 5.8 years ago by holmkn • 0

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3.4k

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edgeR ENEMBL RefSeq

updated 6.7 years ago by Gordon Smyth 53k • written 6.7 years ago by mzillur • 0

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3.2k

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genomicfeatures maketxdbfromucsc refseq

updated 9.3 years ago by Hervé Pagès 16k • written 9.3 years ago by Sebastien Vigneau ▴ 10

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4.6k

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ncbi refseq maketxdbfromgff fetchExtendedChromInfoFromUCSC genomeinfodb

updated 9.8 years ago by Hervé Pagès 16k • written 9.8 years ago by gokcen.eraslan ▴ 10

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3.6k

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promoter granges refseq ucsc organismdb

updated 10.0 years ago by Robert Castelo ★ 3.4k • written 10.0 years ago by efoss ▴ 10

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4.3k

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refseq annotationhub

updated 10.1 years ago by Martin Morgan 25k • written 10.1 years ago by dalloliogm ▴ 50

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2.1k

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customprodb dbsnp refseq varianttools

updated 10.4 years ago by xiaojing.wang ▴ 50 • written 10.4 years ago by kristenbeck527 • 0

9 results • Page 1 of 1

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Comment: Extract snp information from genomic regions with biomaRt -> "oaries_snp" by tomaamylikefood • 0

Using biomaRt to extract SNP information from genomic regions is as simple as setting the correct dataset in this case, and defining your …

Comment: Save the Date for EuroBioC2026 in Turku! by tomaamylikefood • 0

If you re interested in staying productive and entertained while following updates from events like EuroBioC2026, you can Download free And…

Answer: Error installing Seqinfo by fabio.marroni • 0

I am answering my own question. I found the solution thanks to [this post][1], and I am writing here the very simple procedure: 1) Instal…

Comment: Getting a large intercept with DESeq2 by Michael Love 43k

Thanks James -- Denise you can check the "note on factor levels" in the vignette. And I'd recommend `plotCounts()` for looking at individu…

Comment: Getting a large intercept with DESeq2 by James W. MacDonald 68k

As a trivial example, consider this: ``` > model.matrix(~Treatment, data.frame(Treatment = factor(rep(1:3, each = 4)))) (Intercept) Tre…

Votes

Answer: Issues with downloading biomaRt - SeqInfo and S4 Vectors

Issues with downloading biomaRt - SeqInfo and S4 Vectors

Comment: Issues with downloading biomaRt - SeqInfo and S4 Vectors

Answer: What R/Bioconductor tools would you recommend for the analysis of sncRNA, specif

Using edgeR or DESeq2 to analyze allele-specific expression?

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