Showing : refseq • reset
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How can I translate NM_xxx.y:c.xxG>C mRNA sequences to corresponding NC_xxx.y:g.xxxC>G chromosomal coordinates?
refseq Bioconductor conversion
4.1 years ago heiko_kin ▴ 60
0
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0
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681
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Conversion of RefSeq data to chromosomal position
RefSeq Chromosome Mutalyzer
4.7 years ago heiko_kin ▴ 60
0
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5
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2.3k
views
Changing Gene ID annotation style - working with Salmon output [NM...] and resulting count files are numeric-only IDs
tximport Gene IDs txdb RefSeq Salmon
updated 4.9 years ago by 43k • written 4.9 years ago by • 0
1
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3
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3.1k
views
ENSEBL gene_ID in edgeR analysis
edgeR ENEMBL RefSeq
updated 5.8 years ago by 52k • written 5.8 years ago by • 0
6
votes
7
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2.8k
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makeTxDbFromUCSC fails to download refLink table
genomicfeatures maketxdbfromucsc refseq
updated 8.4 years ago by 16k • written 8.4 years ago by ▴ 10
8
votes
7
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3.9k
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Generating a proper TxDb instance from NCBI GFF Annotations File
ncbi refseq maketxdbfromgff fetchExtendedChromInfoFromUCSC genomeinfodb
updated 8.9 years ago by 16k • written 8.9 years ago by ▴ 10
2
votes
2
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3.1k
views
using the "promoters" function with an "OrganismDb" to generate "GRanges" with "REFSEQ" rather than UCSC gene names
promoter granges refseq ucsc organismdb
updated 9.1 years ago by ★ 3.4k • written 9.1 years ago by ▴ 10
4
votes
1
reply
4.0k
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getting the longest transcript by gene from Refseq
refseq annotationhub
updated 9.2 years ago by 25k • written 9.2 years ago by ▴ 50
2
votes
2
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1.8k
views
customProDB: issues getting dbSNP data for human (hg19)
customprodb dbsnp refseq varianttools
updated 9.5 years ago by ▴ 50 • written 9.5 years ago by • 0
9 results • Page 1 of 1
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Comment: Perform gene set enrichment analysis using fgsea on two conditions that don't ha by freemanmclaughlin9969289 • 0
Tools such as Pathway Analysis with Deweighting of Overlapping Genes ([block blast][1]) or Gene Set Enrichment Analysis for Single Cell RNA…
Comment: How to get around the warning message: mzR has been built against a different Rc by Nan • 0
Hello, I was wondering if you were able to resolve this issue? I've recently encountered a similar problem and would like to ask for your a…
Answer: EuroBioC2023 abstract submission closing soon! by excess.gecko.shso • 0
Don't miss out! EuroBioC2023 abstract submissions are nearing the deadline. Sharpen your scientific [Wordle Game][1] skills and submit your…
Answer: EuroBioC2024 abstract submission is open! by excess.gecko.shso • 0
EuroBioC2024 abstract submissions are now open! Join the Oxford conference from Sep 4-6. Submit your abstract by April 26 for short talks, …
Comment: Cross-validation with multiple control subgroups in limma by Ali Barry ▴ 40
Thanks so much for taking the time here, the insights are much appreciated. I suspected I'd have to ad hoc compare results if I did repeat …
Votes
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio
C: edgeR and lack of counts ID on CPM matrix
A: DESeq2 Following RSEM
A: importing RSEM data into DESeq2
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