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News: Final List of Deprecated Package Bioc 3.9
deprecation release software experimentData News
written 5.1 years ago by 3.8k
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2
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1.1k
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News: Final List of Deprecated Packages for Bioc3.7
deprecate package release News
written 6.1 years ago by 3.8k
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4
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705
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News: Important Bioconductor Release 3.18 deadlines this week
Release Devel release devel
updated 6 months ago by ★ 3.9k • written 6 months ago by 3.8k
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7
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News: List of Deprecated Packages for Bioc3.19
Release Devel ExperimentData Software
8 weeks ago • updated 2 days ago shepherl 3.8k
1
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541
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rnaSeqGene workflow not available in Bioconductor 3.18
rnaseqGene Bioconductor3.18 DifferentialExpression release
updated 5 months ago by 41k • written 5 months ago by ▴ 60
5
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News: Bioconductor 3.18 is Released!
Packages Bioconductor Release Software
written 6 months ago by 3.8k
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406
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News: Bioconductor 3.18 Release Schedule
Release Software release
7 months ago shepherl 3.8k
1
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374
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News: Bioconductor 3.18 db0s, OrgDbs, and TxDbs now available
db0 release Annotation
7 months ago kayla.interdonato ▴ 160
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News: Bioconductor 3.19 Release Schedule
Release release Software
7 weeks ago • updated 4 weeks ago shepherl 3.8k
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200
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Rcpp compilation error
Release Rcpp
updated 7 weeks ago by ★ 4.0k • written 7 weeks ago by ▴ 40
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199
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News: Note about packages submitted for Bioconductor 3.19
Release Submission release Bioconductor
12 weeks ago shepherl 3.8k
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News: Important Release 3.18 Freeze Announcment
Release release Bioconductor Bioconducto
14 days ago shepherl 3.8k
12 results • Page 1 of 1
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Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Answer: ATACseq merge peaks by ATpoint ★ 4.0k
That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…
Comment: Deseq2. decontXcounts not integers. Useful alternative? by camp ▴ 10
Yes, @atpoint is correct. decontX decontaminated counts are not integers due to the way the variation inference algorithm works, but you ca…
Comment: Deseq2. decontXcounts not integers. Useful alternative? by ATpoint ★ 4.0k
I do not know this decontamination tool you use but generally: If these counts are basically "corrected" raw counts in the sense that they'…
Answer: Improving the design matrices vignette in RNAseq123 by Gordon Smyth 50k
Thanks to Shian Su, we have confirmed that the problem in the design matrices vignette html is caused by a bug in knitr 1.44 (to do with sp…
Votes
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
Comment: biomaRt : No lock file for BiocFileCache
Answer: Cross-species analysis - how to compute the mid parent value?
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