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Bioconductor web page
GO Cancer tkWidgets reposTools widgetTools simpleaffy affyQCReport affyio GO Cancer
18.5 years ago Seth Falcon ★ 7.4k
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3
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1.3k
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Problems by installing getBioC()
reposTools reposTools
updated 18.6 years ago by ★ 7.4k • written 18.6 years ago by ▴ 10
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2
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3.4k
views
Error in function (classes, fdef, mtable)
cdf genefilter reposTools gcrma matchprobes affyPLM simpleaffy affyio cdf genefilter
updated 19.0 years ago by ★ 7.4k • written 19.0 years ago by ▴ 360
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votes
4
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1.6k
views
problems with Affy vignette and affybatch objects
GO Survival cdf Biobase annotate genefilter multtest reposTools affy affydata graph GO
updated 19.0 years ago by 25k • written 19.0 years ago by ★ 2.2k
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1
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921
views
syncLocalLibList in BioC 1.8 reposTools
reposTools reposTools
updated 19.1 years ago by ★ 7.4k • written 19.1 years ago by ▴ 890
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2
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1.1k
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cdfenv files ATTN: James McDonald
SNP cdf probe reposTools affy SNP cdf probe reposTools affy
updated 19.2 years ago by 68k • written 19.2 years ago by ▴ 20
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1
reply
913
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reposTools 1.10.0 pointing to BioC1.7 not 1.8
reposTools reposTools
updated 19.5 years ago by ★ 7.4k • written 19.5 years ago by ▴ 50
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votes
0
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1.2k
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Why mm's changing after bg.adjust.gcrma?
drosgenome1 cdf Biobase reposTools affy gcrma affyPLM simpleaffy affyQCReport affyio cdf
19.5 years ago Jenny Drnevich ★ 2.2k
0
votes
2
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1.2k
views
problem with CoCiteStats in bioC 1.8
cdf reposTools affy CoCiteStats affyio cdf reposTools affy CoCiteStats affyio
updated 19.5 years ago by ★ 7.4k • written 19.5 years ago by ▴ 890
0
votes
3
replies
1.8k
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error in mas5calls() for soybean chip
Survival hu6800 cdf probe Biobase genefilter reposTools affy affydata limma gcrma made4
updated 19.6 years ago by ▴ 70 • written 19.6 years ago by ★ 2.2k
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0
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1.6k
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Problems using text to subset array information from anexpression set
Cancer cdf reposTools affy PROcess Cancer cdf reposTools affy PROcess
19.6 years ago Alvord, Greg DMS [Contr] ▴ 160
0
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4
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1.8k
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Problems using text to subset array information from an expression set
cdf reposTools affy PROcess cdf reposTools affy PROcess
updated 19.6 years ago by ★ 4.3k • written 19.6 years ago by ▴ 110
0
votes
1
reply
1.4k
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install package from local path with reposTools
reposTools reposTools
updated 19.7 years ago by ▴ 780 • written 19.7 years ago by ▴ 30
0
votes
3
replies
1.7k
views
widgetTools wFuns problem
DynDoc tkWidgets reposTools widgetTools DynDoc tkWidgets reposTools widgetTools
updated 19.8 years ago by ★ 2.9k • written 19.8 years ago by ▴ 80
0
votes
1
reply
1.2k
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ReadAffy question
GO Ruuid DynDoc annotate genefilter multtest tkWidgets reposTools affy widgetTools limma
updated 19.8 years ago by 68k • written 19.8 years ago by ▴ 890
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1
reply
1.1k
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Resourcerer warnings
GO Organism reposTools AnnBuilder Resourcerer GO Organism reposTools AnnBuilder
20.0 years ago Francois Pepin ★ 1.3k
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votes
2
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1.4k
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problem with annaffy aafFunction function
GO hgu95av2 rat2302 Biobase annotate reposTools affy annaffy GO hgu95av2 rat2302 affy
updated 20.0 years ago by 68k • written 20.0 years ago by ▴ 890
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votes
1
reply
962
views
error in getMonograph() - many packages not available
Biobase reposTools affy Biobase reposTools affy
updated 20.1 years ago by ★ 7.4k • written 20.1 years ago by ★ 2.2k
0
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1
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1.1k
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PLIER affinities
rae230a cdf probe reposTools affy plier rae230a cdf probe reposTools affy plier
updated 20.1 years ago by 68k • written 20.1 years ago by ▴ 80
0
votes
0
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837
views
memory problems on IRIX machine
cdf reposTools affy cdf reposTools affy
20.1 years ago Jenny Drnevich ★ 2.2k
0
votes
0
replies
1.2k
views
problem with get.genes.by.pathway
Biobase reposTools KEGGSOAP Biobase reposTools KEGGSOAP
20.1 years ago Kimpel, Mark W ▴ 890
0
votes
3
replies
1.2k
views
problem with package version of rat2302 1.8.5
Annotation rat2302 Biobase reposTools affy Annotation rat2302 Biobase reposTools affy
updated 20.1 years ago by ★ 7.4k • written 20.1 years ago by ▴ 890
0
votes
1
reply
882
views
[R] Bioconductor and R-devel
Microarray Cancer probe reposTools affy Microarray Cancer probe reposTools affy
20.2 years ago Seth Falcon ★ 7.4k
0
votes
1
reply
1.3k
views
File permission failures when building Bioconductor on AMD64/Opteron
reposTools affy reposTools affy
20.2 years ago Michael Redmond ▴ 20
0
votes
0
replies
867
views
moe430a and moe430av2 comparison
moe430a cdf probe reposTools affy moe430a cdf probe reposTools affy
20.3 years ago Margaret Gardiner-Garden ▴ 160
0
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2
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1.5k
views
zebrafish simpleaffy Error in FUN(X[[4]], ...) : subscript out of bounds
zebrafish cdf probe reposTools gcrma matchprobes simpleaffy zebrafish cdf probe gcrma
updated 20.3 years ago by ▴ 780 • written 20.3 years ago by ★ 1.4k
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1
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1.5k
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zebrafish simpleaffy Error in FUN(X[[4]], ...) : subscript out of bounds
zebrafish cdf probe reposTools gcrma matchprobes simpleaffy zebrafish cdf probe gcrma
updated 20.3 years ago by ★ 1.4k • written 20.3 years ago by ★ 1.1k
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1
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1.4k
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Error in qc.affy(unnormalised, ...) : I'm sorry, I do not know about chip type: moe430acdf
GO moe430a cdf reposTools limma gcrma matchprobes siggenes simpleaffy GO moe430a cdf
updated 20.4 years ago by ★ 1.4k • written 20.4 years ago by ★ 1.1k
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0
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1.0k
views
Error in qc.affy(unnormalised, ...) : I'm sorry, I do not know about chip type: moe430acdf
GO moe430a cdf reposTools limma gcrma matchprobes siggenes simpleaffy GO moe430a cdf
20.4 years ago Dick Beyer ★ 1.4k
0
votes
0
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1.0k
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annotation problem with hgu133plus2
GO cdf annotate reposTools affy siggenes annaffy GO cdf annotate reposTools affy
20.5 years ago Seth Falcon ★ 7.4k
0
votes
1
reply
921
views
Limma Load failed
reposTools reposTools
updated 20.5 years ago by ★ 7.4k • written 20.5 years ago by ▴ 10
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2
replies
1.1k
views
ReadAffy for moe430acdf
cdf reposTools affy cdf reposTools affy
updated 20.6 years ago by ★ 7.4k • written 20.6 years ago by ▴ 160
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0
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1.0k
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question about multtest v.1.5.2
Survival genefilter multtest reposTools Survival genefilter multtest reposTools
20.6 years ago ivan.borozan@utoronto.ca ▴ 80
0
votes
3
replies
5.9k
views
ellipse package
reposTools reposTools
updated 20.6 years ago by ★ 13k • written 20.6 years ago by ▴ 20
0
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7
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1.9k
views
getBioC and install.packages2 fail
Proteomics reposTools Proteomics reposTools
updated 20.6 years ago by ★ 7.4k • written 20.6 years ago by ▴ 210
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0
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1.0k
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Follow-up to: [R] Annotation metadata "kills" help.search
Annotation GO hgu133plus2 reposTools Annotation GO hgu133plus2 reposTools
20.6 years ago Gerard Tromp ▴ 10
0
votes
3
replies
1.1k
views
multtest dependencies
Survival genefilter multtest reposTools Survival genefilter multtest reposTools
20.6 years ago Francois Pepin ★ 1.3k
0
votes
0
replies
1.2k
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reposTool package: permission problems on liblisting.Rda file
reposTools reposTools
20.7 years ago Conrad Halling ▴ 10
0
votes
0
replies
931
views
installing packages in bioconductor
reposTools reposTools
20.7 years ago Seth Falcon ★ 7.4k
0
votes
2
replies
1.1k
views
error in installing Bioconductor development packages
Biobase annotate genefilter reposTools affy Biobase annotate genefilter reposTools affy
updated 20.7 years ago by ★ 7.4k • written 20.7 years ago by ▴ 10
0
votes
2
replies
1.3k
views
getBioC install problem in Fedora
reposTools reposTools
updated 20.7 years ago by ★ 5.5k • written 20.7 years ago by ▴ 320
0
votes
2
replies
1.3k
views
Need better quality control for reliable installation of bioconductor packages?
Cancer reposTools RdbiPgSQL PROcess twilight iSPlot Cancer reposTools RdbiPgSQL PROcess
updated 20.9 years ago by ★ 5.5k • written 20.9 years ago by 53k
0
votes
2
replies
1.3k
views
Problems installing Bioconductor on linux(MEPIS)
reposTools reposTools
updated 21.0 years ago by ★ 5.5k • written 21.0 years ago by ▴ 420
0
votes
0
replies
1.5k
views
Installing Rv2.0.0 on MacOS 10.3.x
moe430a cdf probe annotate genefilter reposTools affy annaffy moe430a cdf probe affy
21.0 years ago rkakkar@uchicago.edu ▴ 100
0
votes
1
reply
903
views
where is GO 1.6.0 version required by annaffy , anyone know?
GO reposTools GO reposTools
updated 21.1 years ago by ▴ 360 • written 21.1 years ago by ★ 5.5k
0
votes
3
replies
1.3k
views
Problem with BioC
reposTools reposTools
updated 21.2 years ago by ★ 3.9k • written 21.2 years ago by ▴ 100
0
votes
1
reply
894
views
bug in reposTools 1.4.11: missing getRversion
reposTools reposTools
updated 21.2 years ago by ★ 3.9k • written 21.2 years ago by ▴ 30
0
votes
1
reply
899
views
error with update.package2
reposTools reposTools
21.2 years ago Adaikalavan Ramasamy ★ 1.8k
0
votes
0
replies
790
views
Problem with genRepos function in reposTools package
reposTools reposTools
21.3 years ago Valtteri Wirta ▴ 30
0
votes
0
replies
881
views
repos tools
reposTools reposTools
21.3 years ago peter robinson ▴ 300
106 results • Page 1 of 3
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Comment: What R/Bioconductor tools would you recommend for the analysis of sncRNA, specif by Matthew Thornton ▴ 380
WOW! Thank you so much for the information. I will do this.
Comment: "Watched Tags" are being erased rather than updated by RalphSavage99 • 0
Thanks for sharing https://github.com/Bioconductor/support.bioconductor.org/issues/112
Answer: Add additional maintainer for MOFA2 by shepherl 4.2k
These requests are best on the bioc-devel @ r-project.org or a request to maintainer @ bioconductor.org -- We would ideally need the curre…
Answer: After running samtools, the featureCounts command crashed. by Kevin Blighe ★ 4.0k
Hi Rui Tang, The "buffer overflow detected" error in featureCounts usually stems from a corrupted or malformed GTF file, often due to tr…
Answer: Problem with the TMB plot by Kevin Blighe ★ 4.0k
Hi, The linear TMB plot with no clustering suggests your variant calls may lack sample-specific discrimination, likely due to filtering ap…
Votes
Answer: What R/Bioconductor tools would you recommend for the analysis of sncRNA, specif
Using edgeR or DESeq2 to analyze allele-specific expression?
Answer: DESeq2 design for haplotype MPRA
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Failure to download resources (MeSHDb) from AnnotationHub
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Scholar to shepherl 4.2k
Scholar to James W. MacDonald 68k
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