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Bioconductor web page
GO
Cancer
tkWidgets
reposTools
widgetTools
simpleaffy
affyQCReport
affyio
GO
Cancer
17.0 years ago
Seth Falcon
★ 7.4k
0
votes
3
replies
973
views
Problems by installing getBioC()
reposTools
reposTools
updated 17.1 years ago by
Seth Falcon
★ 7.4k • written 17.1 years ago by
Schmitt, Corinna
▴ 10
0
votes
2
replies
2.9k
views
Error in function (classes, fdef, mtable)
cdf
genefilter
reposTools
gcrma
matchprobes
affyPLM
simpleaffy
affyio
cdf
genefilter
updated 17.5 years ago by
Seth Falcon
★ 7.4k • written 17.5 years ago by
D.Enrique ESCOBAR ESPINOZA
▴ 360
0
votes
4
replies
1.2k
views
problems with Affy vignette and affybatch objects
GO
Survival
cdf
Biobase
annotate
genefilter
multtest
reposTools
affy
affydata
graph
GO
updated 17.6 years ago by
Martin Morgan
25k • written 17.6 years ago by
Jenny Drnevich
★ 2.2k
0
votes
1
reply
729
views
syncLocalLibList in BioC 1.8 reposTools
reposTools
reposTools
updated 17.6 years ago by
Seth Falcon
★ 7.4k • written 17.6 years ago by
Kimpel, Mark W
▴ 890
0
votes
2
replies
890
views
cdfenv files ATTN: James McDonald
SNP
cdf
probe
reposTools
affy
SNP
cdf
probe
reposTools
affy
updated 17.7 years ago by
James W. MacDonald
65k • written 17.7 years ago by
Andrew Van Brunt
▴ 20
0
votes
1
reply
734
views
reposTools 1.10.0 pointing to BioC1.7 not 1.8
reposTools
reposTools
updated 18.0 years ago by
Seth Falcon
★ 7.4k • written 18.0 years ago by
Roels, Steven
▴ 50
0
votes
0
replies
890
views
Why mm's changing after bg.adjust.gcrma?
drosgenome1
cdf
Biobase
reposTools
affy
gcrma
affyPLM
simpleaffy
affyQCReport
affyio
cdf
18.0 years ago
Jenny Drnevich
★ 2.2k
0
votes
2
replies
927
views
problem with CoCiteStats in bioC 1.8
cdf
reposTools
affy
CoCiteStats
affyio
cdf
reposTools
affy
CoCiteStats
affyio
updated 18.0 years ago by
Seth Falcon
★ 7.4k • written 18.0 years ago by
Kimpel, Mark W
▴ 890
0
votes
3
replies
1.4k
views
error in mas5calls() for soybean chip
Survival
hu6800
cdf
probe
Biobase
genefilter
reposTools
affy
affydata
limma
gcrma
made4
updated 18.1 years ago by
Ken Simpson
▴ 70 • written 18.1 years ago by
Jenny Drnevich
★ 2.2k
0
votes
0
replies
1.3k
views
Problems using text to subset array information from anexpression set
Cancer
cdf
reposTools
affy
PROcess
Cancer
cdf
reposTools
affy
PROcess
18.1 years ago
Alvord, Greg DMS [Contr]
▴ 160
0
votes
4
replies
1.5k
views
Problems using text to subset array information from an expression set
cdf
reposTools
affy
PROcess
cdf
reposTools
affy
PROcess
updated 18.1 years ago by
Benilton Carvalho
★ 4.3k • written 18.1 years ago by
Jeff Lande
▴ 110
0
votes
1
reply
1.1k
views
install package from local path with reposTools
reposTools
reposTools
updated 18.2 years ago by
Ting-Yuan Liu FHCRC
▴ 780 • written 18.2 years ago by
Axel Rasche
▴ 30
0
votes
3
replies
1.3k
views
widgetTools wFuns problem
DynDoc
tkWidgets
reposTools
widgetTools
DynDoc
tkWidgets
reposTools
widgetTools
updated 18.3 years ago by
John Zhang
★ 2.9k • written 18.3 years ago by
mattia
▴ 80
0
votes
1
reply
917
views
ReadAffy question
GO
Ruuid
DynDoc
annotate
genefilter
multtest
tkWidgets
reposTools
affy
widgetTools
limma
updated 18.3 years ago by
James W. MacDonald
65k • written 18.3 years ago by
Kimpel, Mark W
▴ 890
0
votes
1
reply
909
views
Resourcerer warnings
GO
Organism
reposTools
AnnBuilder
Resourcerer
GO
Organism
reposTools
AnnBuilder
18.5 years ago
Francois Pepin
★ 1.3k
0
votes
2
replies
1.1k
views
problem with annaffy aafFunction function
GO
hgu95av2
rat2302
Biobase
annotate
reposTools
affy
annaffy
GO
hgu95av2
rat2302
affy
updated 18.5 years ago by
James W. MacDonald
65k • written 18.5 years ago by
Kimpel, Mark W
▴ 890
0
votes
1
reply
779
views
error in getMonograph() - many packages not available
Biobase
reposTools
affy
Biobase
reposTools
affy
updated 18.6 years ago by
Seth Falcon
★ 7.4k • written 18.6 years ago by
Jenny Drnevich
★ 2.2k
0
votes
1
reply
888
views
PLIER affinities
rae230a
cdf
probe
reposTools
affy
plier
rae230a
cdf
probe
reposTools
affy
plier
updated 18.6 years ago by
James W. MacDonald
65k • written 18.6 years ago by
Jeremy Gollub
▴ 80
0
votes
0
replies
678
views
memory problems on IRIX machine
cdf
reposTools
affy
cdf
reposTools
affy
18.6 years ago
Jenny Drnevich
★ 2.2k
0
votes
0
replies
926
views
problem with get.genes.by.pathway
Biobase
reposTools
KEGGSOAP
Biobase
reposTools
KEGGSOAP
18.6 years ago
Kimpel, Mark W
▴ 890
0
votes
3
replies
947
views
problem with package version of rat2302 1.8.5
Annotation
rat2302
Biobase
reposTools
affy
Annotation
rat2302
Biobase
reposTools
affy
updated 18.6 years ago by
Seth Falcon
★ 7.4k • written 18.6 years ago by
Kimpel, Mark W
▴ 890
0
votes
1
reply
703
views
[R] Bioconductor and R-devel
Microarray
Cancer
probe
reposTools
affy
Microarray
Cancer
probe
reposTools
affy
18.7 years ago
Seth Falcon
★ 7.4k
0
votes
1
reply
1.1k
views
File permission failures when building Bioconductor on AMD64/Opteron
reposTools
affy
reposTools
affy
18.7 years ago
Michael Redmond
▴ 20
0
votes
0
replies
678
views
moe430a and moe430av2 comparison
moe430a
cdf
probe
reposTools
affy
moe430a
cdf
probe
reposTools
affy
18.8 years ago
Margaret Gardiner-Garden
▴ 160
0
votes
2
replies
1.1k
views
zebrafish simpleaffy Error in FUN(X[[4]], ...) : subscript out of bounds
zebrafish
cdf
probe
reposTools
gcrma
matchprobes
simpleaffy
zebrafish
cdf
probe
gcrma
updated 18.8 years ago by
Ting-Yuan Liu FHCRC
▴ 780 • written 18.8 years ago by
Dick Beyer
★ 1.4k
0
votes
1
reply
1.3k
views
zebrafish simpleaffy Error in FUN(X[[4]], ...) : subscript out of bounds
zebrafish
cdf
probe
reposTools
gcrma
matchprobes
simpleaffy
zebrafish
cdf
probe
gcrma
updated 18.8 years ago by
Dick Beyer
★ 1.4k • written 18.8 years ago by
Crispin Miller
★ 1.1k
0
votes
1
reply
1.1k
views
Error in qc.affy(unnormalised, ...) : I'm sorry, I do not know about chip type: moe430acdf
GO
moe430a
cdf
reposTools
limma
gcrma
matchprobes
siggenes
simpleaffy
GO
moe430a
cdf
updated 18.9 years ago by
Dick Beyer
★ 1.4k • written 18.9 years ago by
Crispin Miller
★ 1.1k
0
votes
0
replies
863
views
Error in qc.affy(unnormalised, ...) : I'm sorry, I do not know about chip type: moe430acdf
GO
moe430a
cdf
reposTools
limma
gcrma
matchprobes
siggenes
simpleaffy
GO
moe430a
cdf
18.9 years ago
Dick Beyer
★ 1.4k
0
votes
0
replies
840
views
annotation problem with hgu133plus2
GO
cdf
annotate
reposTools
affy
siggenes
annaffy
GO
cdf
annotate
reposTools
affy
19.0 years ago
Seth Falcon
★ 7.4k
0
votes
1
reply
755
views
Limma Load failed
reposTools
reposTools
updated 19.0 years ago by
Seth Falcon
★ 7.4k • written 19.0 years ago by
Trent J Nelson
▴ 10
0
votes
2
replies
873
views
ReadAffy for moe430acdf
cdf
reposTools
affy
cdf
reposTools
affy
updated 19.1 years ago by
Seth Falcon
★ 7.4k • written 19.1 years ago by
Margaret Gardiner-Garden
▴ 160
0
votes
0
replies
863
views
question about multtest v.1.5.2
Survival
genefilter
multtest
reposTools
Survival
genefilter
multtest
reposTools
19.1 years ago
ivan.borozan@utoronto.ca
▴ 80
0
votes
3
replies
5.1k
views
ellipse package
reposTools
reposTools
updated 19.1 years ago by
Wolfgang Huber
★ 13k • written 19.1 years ago by
sachin Kumar
▴ 20
0
votes
7
replies
1.4k
views
getBioC and install.packages2 fail
Proteomics
reposTools
Proteomics
reposTools
updated 19.1 years ago by
Seth Falcon
★ 7.4k • written 19.1 years ago by
Arne.Muller@sanofi-aventis.com
▴ 210
0
votes
0
replies
845
views
Follow-up to: [R] Annotation metadata "kills" help.search
Annotation
GO
hgu133plus2
reposTools
Annotation
GO
hgu133plus2
reposTools
19.1 years ago
Gerard Tromp
▴ 10
0
votes
3
replies
848
views
multtest dependencies
Survival
genefilter
multtest
reposTools
Survival
genefilter
multtest
reposTools
19.2 years ago • updated 19.1 years ago
Francois Pepin
★ 1.3k
0
votes
0
replies
1.0k
views
reposTool package: permission problems on liblisting.Rda file
reposTools
reposTools
19.2 years ago
Conrad Halling
▴ 10
0
votes
0
replies
756
views
installing packages in bioconductor
reposTools
reposTools
19.2 years ago
Seth Falcon
★ 7.4k
0
votes
2
replies
904
views
error in installing Bioconductor development packages
Biobase
annotate
genefilter
reposTools
affy
Biobase
annotate
genefilter
reposTools
affy
updated 19.3 years ago by
Seth Falcon
★ 7.4k • written 19.3 years ago by
Tom Shi
▴ 10
0
votes
2
replies
1.0k
views
getBioC install problem in Fedora
reposTools
reposTools
updated 19.3 years ago by
rgentleman
★ 5.5k • written 19.3 years ago by
Dr Gyorffy Balazs
▴ 320
0
votes
2
replies
1.0k
views
Need better quality control for reliable installation of bioconductor packages?
Cancer
reposTools
RdbiPgSQL
PROcess
twilight
iSPlot
Cancer
reposTools
RdbiPgSQL
PROcess
updated 19.4 years ago by
rgentleman
★ 5.5k • written 19.4 years ago by
Gordon Smyth
50k
0
votes
2
replies
998
views
Problems installing Bioconductor on linux(MEPIS)
reposTools
reposTools
updated 19.5 years ago by
rgentleman
★ 5.5k • written 19.5 years ago by
hrishikesh deshmukh
▴ 420
0
votes
0
replies
1.1k
views
Installing Rv2.0.0 on MacOS 10.3.x
moe430a
cdf
probe
annotate
genefilter
reposTools
affy
annaffy
moe430a
cdf
probe
affy
19.6 years ago
rkakkar@uchicago.edu
▴ 100
0
votes
1
reply
680
views
where is GO 1.6.0 version required by annaffy , anyone know?
GO
reposTools
GO
reposTools
updated 19.6 years ago by
Saurin D. Jani
▴ 360 • written 19.6 years ago by
rgentleman
★ 5.5k
0
votes
3
replies
1.0k
views
Problem with BioC
reposTools
reposTools
updated 19.7 years ago by
Jeff Gentry
★ 3.9k • written 19.7 years ago by
Dr Narendra K. Kaushik [npm_nmd]
▴ 100
0
votes
1
reply
721
views
bug in reposTools 1.4.11: missing getRversion
reposTools
reposTools
updated 19.7 years ago by
Jeff Gentry
★ 3.9k • written 19.7 years ago by
Ivo Kwee
▴ 30
0
votes
1
reply
709
views
error with update.package2
reposTools
reposTools
19.7 years ago
Adaikalavan Ramasamy
★ 1.8k
0
votes
0
replies
636
views
Problem with genRepos function in reposTools package
reposTools
reposTools
19.8 years ago
Valtteri Wirta
▴ 30
0
votes
0
replies
725
views
repos tools
reposTools
reposTools
19.8 years ago
peter robinson
▴ 300
50 results • Page
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Comment: Ensembl plants at annotationHub?
by
Daniele
• 0
Dear Johannes, Would it be possible to create the EnsDb for Triticum aestivum (IWGSC)? Thank you very much, Daniele
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
by
BioinfGuru
▴ 30
Figured it out with ?eigencorplot, thanks Michael. I was trying to pass 10 PCs when I only had 8, and I was including metadata columns that…
Answer: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set
by
makala
• 0
Thanks a lot!
Comment: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set
by
Erik Wright
▴ 150
Thanks for notifying us of this broken link. It should be fixed on the Downloads page now. [1] [1]: http://www2.decipher.codes/Classificat…
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
by
Matthew Thornton
▴ 360
So it turns out that if the count and the size are the same in 'GOstats", the odds ratio is 'inf'. These are causing the issue. Thank you!!
Votes
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
Comment: Can DESeq2 rlog normalized matrix reflects time course result directly?
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