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Bioconductor web page
GO Cancer tkWidgets reposTools widgetTools simpleaffy affyQCReport affyio GO Cancer
17.0 years ago Seth Falcon ★ 7.4k
0
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3
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973
views
Problems by installing getBioC()
reposTools reposTools
updated 17.1 years ago by ★ 7.4k • written 17.1 years ago by ▴ 10
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2
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2.9k
views
Error in function (classes, fdef, mtable)
cdf genefilter reposTools gcrma matchprobes affyPLM simpleaffy affyio cdf genefilter
updated 17.5 years ago by ★ 7.4k • written 17.5 years ago by ▴ 360
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4
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1.2k
views
problems with Affy vignette and affybatch objects
GO Survival cdf Biobase annotate genefilter multtest reposTools affy affydata graph GO
updated 17.6 years ago by 25k • written 17.6 years ago by ★ 2.2k
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1
reply
729
views
syncLocalLibList in BioC 1.8 reposTools
reposTools reposTools
updated 17.6 years ago by ★ 7.4k • written 17.6 years ago by ▴ 890
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2
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890
views
cdfenv files ATTN: James McDonald
SNP cdf probe reposTools affy SNP cdf probe reposTools affy
updated 17.7 years ago by 65k • written 17.7 years ago by ▴ 20
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1
reply
734
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reposTools 1.10.0 pointing to BioC1.7 not 1.8
reposTools reposTools
updated 18.0 years ago by ★ 7.4k • written 18.0 years ago by ▴ 50
0
votes
0
replies
890
views
Why mm's changing after bg.adjust.gcrma?
drosgenome1 cdf Biobase reposTools affy gcrma affyPLM simpleaffy affyQCReport affyio cdf
18.0 years ago Jenny Drnevich ★ 2.2k
0
votes
2
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927
views
problem with CoCiteStats in bioC 1.8
cdf reposTools affy CoCiteStats affyio cdf reposTools affy CoCiteStats affyio
updated 18.0 years ago by ★ 7.4k • written 18.0 years ago by ▴ 890
0
votes
3
replies
1.4k
views
error in mas5calls() for soybean chip
Survival hu6800 cdf probe Biobase genefilter reposTools affy affydata limma gcrma made4
updated 18.1 years ago by ▴ 70 • written 18.1 years ago by ★ 2.2k
0
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0
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1.3k
views
Problems using text to subset array information from anexpression set
Cancer cdf reposTools affy PROcess Cancer cdf reposTools affy PROcess
18.1 years ago Alvord, Greg DMS [Contr] ▴ 160
0
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4
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1.5k
views
Problems using text to subset array information from an expression set
cdf reposTools affy PROcess cdf reposTools affy PROcess
updated 18.1 years ago by ★ 4.3k • written 18.1 years ago by ▴ 110
0
votes
1
reply
1.1k
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install package from local path with reposTools
reposTools reposTools
updated 18.2 years ago by ▴ 780 • written 18.2 years ago by ▴ 30
0
votes
3
replies
1.3k
views
widgetTools wFuns problem
DynDoc tkWidgets reposTools widgetTools DynDoc tkWidgets reposTools widgetTools
updated 18.3 years ago by ★ 2.9k • written 18.3 years ago by ▴ 80
0
votes
1
reply
917
views
ReadAffy question
GO Ruuid DynDoc annotate genefilter multtest tkWidgets reposTools affy widgetTools limma
updated 18.3 years ago by 65k • written 18.3 years ago by ▴ 890
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1
reply
909
views
Resourcerer warnings
GO Organism reposTools AnnBuilder Resourcerer GO Organism reposTools AnnBuilder
18.5 years ago Francois Pepin ★ 1.3k
0
votes
2
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1.1k
views
problem with annaffy aafFunction function
GO hgu95av2 rat2302 Biobase annotate reposTools affy annaffy GO hgu95av2 rat2302 affy
updated 18.5 years ago by 65k • written 18.5 years ago by ▴ 890
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1
reply
779
views
error in getMonograph() - many packages not available
Biobase reposTools affy Biobase reposTools affy
updated 18.6 years ago by ★ 7.4k • written 18.6 years ago by ★ 2.2k
0
votes
1
reply
888
views
PLIER affinities
rae230a cdf probe reposTools affy plier rae230a cdf probe reposTools affy plier
updated 18.6 years ago by 65k • written 18.6 years ago by ▴ 80
0
votes
0
replies
678
views
memory problems on IRIX machine
cdf reposTools affy cdf reposTools affy
18.6 years ago Jenny Drnevich ★ 2.2k
0
votes
0
replies
926
views
problem with get.genes.by.pathway
Biobase reposTools KEGGSOAP Biobase reposTools KEGGSOAP
18.6 years ago Kimpel, Mark W ▴ 890
0
votes
3
replies
947
views
problem with package version of rat2302 1.8.5
Annotation rat2302 Biobase reposTools affy Annotation rat2302 Biobase reposTools affy
updated 18.6 years ago by ★ 7.4k • written 18.6 years ago by ▴ 890
0
votes
1
reply
703
views
[R] Bioconductor and R-devel
Microarray Cancer probe reposTools affy Microarray Cancer probe reposTools affy
18.7 years ago Seth Falcon ★ 7.4k
0
votes
1
reply
1.1k
views
File permission failures when building Bioconductor on AMD64/Opteron
reposTools affy reposTools affy
18.7 years ago Michael Redmond ▴ 20
0
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0
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678
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moe430a and moe430av2 comparison
moe430a cdf probe reposTools affy moe430a cdf probe reposTools affy
18.8 years ago Margaret Gardiner-Garden ▴ 160
0
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1
reply
1.3k
views
zebrafish simpleaffy Error in FUN(X[[4]], ...) : subscript out of bounds
zebrafish cdf probe reposTools gcrma matchprobes simpleaffy zebrafish cdf probe gcrma
updated 18.8 years ago by ★ 1.4k • written 18.8 years ago by ★ 1.1k
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2
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1.1k
views
zebrafish simpleaffy Error in FUN(X[[4]], ...) : subscript out of bounds
zebrafish cdf probe reposTools gcrma matchprobes simpleaffy zebrafish cdf probe gcrma
updated 18.8 years ago by ▴ 780 • written 18.8 years ago by ★ 1.4k
0
votes
1
reply
1.1k
views
Error in qc.affy(unnormalised, ...) : I'm sorry, I do not know about chip type: moe430acdf
GO moe430a cdf reposTools limma gcrma matchprobes siggenes simpleaffy GO moe430a cdf
updated 18.9 years ago by ★ 1.4k • written 18.9 years ago by ★ 1.1k
0
votes
0
replies
863
views
Error in qc.affy(unnormalised, ...) : I'm sorry, I do not know about chip type: moe430acdf
GO moe430a cdf reposTools limma gcrma matchprobes siggenes simpleaffy GO moe430a cdf
18.9 years ago Dick Beyer ★ 1.4k
0
votes
0
replies
840
views
annotation problem with hgu133plus2
GO cdf annotate reposTools affy siggenes annaffy GO cdf annotate reposTools affy
19.0 years ago Seth Falcon ★ 7.4k
0
votes
1
reply
755
views
Limma Load failed
reposTools reposTools
updated 19.0 years ago by ★ 7.4k • written 19.0 years ago by ▴ 10
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2
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873
views
ReadAffy for moe430acdf
cdf reposTools affy cdf reposTools affy
updated 19.1 years ago by ★ 7.4k • written 19.1 years ago by ▴ 160
0
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0
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863
views
question about multtest v.1.5.2
Survival genefilter multtest reposTools Survival genefilter multtest reposTools
19.1 years ago ivan.borozan@utoronto.ca ▴ 80
0
votes
3
replies
5.1k
views
ellipse package
reposTools reposTools
updated 19.1 years ago by ★ 13k • written 19.1 years ago by ▴ 20
0
votes
0
replies
845
views
Follow-up to: [R] Annotation metadata "kills" help.search
Annotation GO hgu133plus2 reposTools Annotation GO hgu133plus2 reposTools
19.1 years ago Gerard Tromp ▴ 10
0
votes
7
replies
1.4k
views
getBioC and install.packages2 fail
Proteomics reposTools Proteomics reposTools
updated 19.1 years ago by ★ 7.4k • written 19.1 years ago by ▴ 210
0
votes
3
replies
848
views
multtest dependencies
Survival genefilter multtest reposTools Survival genefilter multtest reposTools
19.2 years ago • updated 19.1 years ago Francois Pepin ★ 1.3k
0
votes
0
replies
1.0k
views
reposTool package: permission problems on liblisting.Rda file
reposTools reposTools
19.2 years ago Conrad Halling ▴ 10
0
votes
0
replies
756
views
installing packages in bioconductor
reposTools reposTools
19.2 years ago Seth Falcon ★ 7.4k
0
votes
2
replies
1.0k
views
getBioC install problem in Fedora
reposTools reposTools
updated 19.3 years ago by ★ 5.5k • written 19.3 years ago by ▴ 320
0
votes
2
replies
904
views
error in installing Bioconductor development packages
Biobase annotate genefilter reposTools affy Biobase annotate genefilter reposTools affy
updated 19.3 years ago by ★ 7.4k • written 19.3 years ago by ▴ 10
0
votes
2
replies
1.0k
views
Need better quality control for reliable installation of bioconductor packages?
Cancer reposTools RdbiPgSQL PROcess twilight iSPlot Cancer reposTools RdbiPgSQL PROcess
updated 19.4 years ago by ★ 5.5k • written 19.4 years ago by 50k
0
votes
2
replies
998
views
Problems installing Bioconductor on linux(MEPIS)
reposTools reposTools
updated 19.5 years ago by ★ 5.5k • written 19.5 years ago by ▴ 420
0
votes
0
replies
1.1k
views
Installing Rv2.0.0 on MacOS 10.3.x
moe430a cdf probe annotate genefilter reposTools affy annaffy moe430a cdf probe affy
19.6 years ago rkakkar@uchicago.edu ▴ 100
0
votes
1
reply
680
views
where is GO 1.6.0 version required by annaffy , anyone know?
GO reposTools GO reposTools
updated 19.6 years ago by ▴ 360 • written 19.6 years ago by ★ 5.5k
0
votes
3
replies
1.0k
views
Problem with BioC
reposTools reposTools
updated 19.7 years ago by ★ 3.9k • written 19.7 years ago by ▴ 100
0
votes
1
reply
721
views
bug in reposTools 1.4.11: missing getRversion
reposTools reposTools
updated 19.7 years ago by ★ 3.9k • written 19.7 years ago by ▴ 30
0
votes
1
reply
709
views
error with update.package2
reposTools reposTools
19.7 years ago Adaikalavan Ramasamy ★ 1.8k
0
votes
0
replies
636
views
Problem with genRepos function in reposTools package
reposTools reposTools
19.8 years ago Valtteri Wirta ▴ 30
0
votes
0
replies
725
views
repos tools
reposTools reposTools
19.8 years ago peter robinson ▴ 300
50 results • Page 1 of 1
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Comment: Ensembl plants at annotationHub? by Daniele • 0
Dear Johannes, Would it be possible to create the EnsDb for Triticum aestivum (IWGSC)? Thank you very much, Daniele
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools by BioinfGuru ▴ 30
Figured it out with ?eigencorplot, thanks Michael. I was trying to pass 10 PCs when I only had 8, and I was including metadata columns that…
Answer: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set by makala • 0
Thanks a lot!
Comment: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set by Erik Wright ▴ 150
Thanks for notifying us of this broken link. It should be fixed on the Downloads page now. [1] [1]: http://www2.decipher.codes/Classificat…
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa by Matthew Thornton ▴ 360
So it turns out that if the count and the size are the same in 'GOstats", the odds ratio is 'inf'. These are causing the issue. Thank you!!
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Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
Comment: Can DESeq2 rlog normalized matrix reflects time course result directly?
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