Showing : repostools • reset
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Bioconductor web page
GO Cancer tkWidgets reposTools widgetTools simpleaffy affyQCReport affyio GO Cancer
16.9 years ago Seth Falcon ★ 7.4k
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votes
3
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952
views
Problems by installing getBioC()
reposTools reposTools
updated 17.0 years ago by ★ 7.4k • written 17.0 years ago by ▴ 10
0
votes
2
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2.9k
views
Error in function (classes, fdef, mtable)
cdf genefilter reposTools gcrma matchprobes affyPLM simpleaffy affyio cdf genefilter
updated 17.4 years ago by ★ 7.4k • written 17.4 years ago by ▴ 360
0
votes
4
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1.2k
views
problems with Affy vignette and affybatch objects
GO Survival cdf Biobase annotate genefilter multtest reposTools affy affydata graph GO
updated 17.5 years ago by 25k • written 17.5 years ago by ★ 2.2k
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1
reply
721
views
syncLocalLibList in BioC 1.8 reposTools
reposTools reposTools
updated 17.5 years ago by ★ 7.4k • written 17.5 years ago by ▴ 890
0
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2
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886
views
cdfenv files ATTN: James McDonald
SNP cdf probe reposTools affy SNP cdf probe reposTools affy
updated 17.6 years ago by 65k • written 17.6 years ago by ▴ 20
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votes
1
reply
728
views
reposTools 1.10.0 pointing to BioC1.7 not 1.8
reposTools reposTools
updated 17.9 years ago by ★ 7.4k • written 17.9 years ago by ▴ 50
0
votes
0
replies
884
views
Why mm's changing after bg.adjust.gcrma?
drosgenome1 cdf Biobase reposTools affy gcrma affyPLM simpleaffy affyQCReport affyio cdf
17.9 years ago Jenny Drnevich ★ 2.2k
0
votes
2
replies
918
views
problem with CoCiteStats in bioC 1.8
cdf reposTools affy CoCiteStats affyio cdf reposTools affy CoCiteStats affyio
updated 18.0 years ago by ★ 7.4k • written 18.0 years ago by ▴ 890
0
votes
3
replies
1.4k
views
error in mas5calls() for soybean chip
Survival hu6800 cdf probe Biobase genefilter reposTools affy affydata limma gcrma made4
updated 18.0 years ago by ▴ 70 • written 18.0 years ago by ★ 2.2k
0
votes
0
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1.3k
views
Problems using text to subset array information from anexpression set
Cancer cdf reposTools affy PROcess Cancer cdf reposTools affy PROcess
18.1 years ago Alvord, Greg DMS [Contr] ▴ 160
0
votes
4
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1.5k
views
Problems using text to subset array information from an expression set
cdf reposTools affy PROcess cdf reposTools affy PROcess
updated 18.1 years ago by ★ 4.3k • written 18.1 years ago by ▴ 110
0
votes
1
reply
1.1k
views
install package from local path with reposTools
reposTools reposTools
updated 18.2 years ago by ▴ 780 • written 18.2 years ago by ▴ 30
0
votes
3
replies
1.3k
views
widgetTools wFuns problem
DynDoc tkWidgets reposTools widgetTools DynDoc tkWidgets reposTools widgetTools
updated 18.3 years ago by ★ 2.9k • written 18.3 years ago by ▴ 80
0
votes
1
reply
910
views
ReadAffy question
GO Ruuid DynDoc annotate genefilter multtest tkWidgets reposTools affy widgetTools limma
updated 18.3 years ago by 65k • written 18.3 years ago by ▴ 890
0
votes
1
reply
906
views
Resourcerer warnings
GO Organism reposTools AnnBuilder Resourcerer GO Organism reposTools AnnBuilder
18.5 years ago Francois Pepin ★ 1.3k
0
votes
2
replies
1.1k
views
problem with annaffy aafFunction function
GO hgu95av2 rat2302 Biobase annotate reposTools affy annaffy GO hgu95av2 rat2302 affy
updated 18.5 years ago by 65k • written 18.5 years ago by ▴ 890
0
votes
1
reply
775
views
error in getMonograph() - many packages not available
Biobase reposTools affy Biobase reposTools affy
updated 18.5 years ago by ★ 7.4k • written 18.5 years ago by ★ 2.2k
0
votes
1
reply
882
views
PLIER affinities
rae230a cdf probe reposTools affy plier rae230a cdf probe reposTools affy plier
updated 18.6 years ago by 65k • written 18.6 years ago by ▴ 80
0
votes
0
replies
666
views
memory problems on IRIX machine
cdf reposTools affy cdf reposTools affy
18.6 years ago Jenny Drnevich ★ 2.2k
0
votes
0
replies
909
views
problem with get.genes.by.pathway
Biobase reposTools KEGGSOAP Biobase reposTools KEGGSOAP
18.6 years ago Kimpel, Mark W ▴ 890
0
votes
3
replies
936
views
problem with package version of rat2302 1.8.5
Annotation rat2302 Biobase reposTools affy Annotation rat2302 Biobase reposTools affy
updated 18.6 years ago by ★ 7.4k • written 18.6 years ago by ▴ 890
0
votes
1
reply
697
views
[R] Bioconductor and R-devel
Microarray Cancer probe reposTools affy Microarray Cancer probe reposTools affy
18.7 years ago Seth Falcon ★ 7.4k
0
votes
1
reply
1.1k
views
File permission failures when building Bioconductor on AMD64/Opteron
reposTools affy reposTools affy
18.7 years ago Michael Redmond ▴ 20
0
votes
0
replies
675
views
moe430a and moe430av2 comparison
moe430a cdf probe reposTools affy moe430a cdf probe reposTools affy
18.8 years ago Margaret Gardiner-Garden ▴ 160
0
votes
2
replies
1.1k
views
zebrafish simpleaffy Error in FUN(X[[4]], ...) : subscript out of bounds
zebrafish cdf probe reposTools gcrma matchprobes simpleaffy zebrafish cdf probe gcrma
updated 18.8 years ago by ▴ 780 • written 18.8 years ago by ★ 1.4k
0
votes
1
reply
1.2k
views
zebrafish simpleaffy Error in FUN(X[[4]], ...) : subscript out of bounds
zebrafish cdf probe reposTools gcrma matchprobes simpleaffy zebrafish cdf probe gcrma
updated 18.8 years ago by ★ 1.4k • written 18.8 years ago by ★ 1.1k
0
votes
1
reply
1.1k
views
Error in qc.affy(unnormalised, ...) : I'm sorry, I do not know about chip type: moe430acdf
GO moe430a cdf reposTools limma gcrma matchprobes siggenes simpleaffy GO moe430a cdf
updated 18.8 years ago by ★ 1.4k • written 18.8 years ago by ★ 1.1k
0
votes
0
replies
859
views
Error in qc.affy(unnormalised, ...) : I'm sorry, I do not know about chip type: moe430acdf
GO moe430a cdf reposTools limma gcrma matchprobes siggenes simpleaffy GO moe430a cdf
18.8 years ago Dick Beyer ★ 1.4k
0
votes
0
replies
836
views
annotation problem with hgu133plus2
GO cdf annotate reposTools affy siggenes annaffy GO cdf annotate reposTools affy
18.9 years ago Seth Falcon ★ 7.4k
0
votes
1
reply
751
views
Limma Load failed
reposTools reposTools
updated 19.0 years ago by ★ 7.4k • written 19.0 years ago by ▴ 10
0
votes
2
replies
866
views
ReadAffy for moe430acdf
cdf reposTools affy cdf reposTools affy
updated 19.0 years ago by ★ 7.4k • written 19.0 years ago by ▴ 160
0
votes
0
replies
860
views
question about multtest v.1.5.2
Survival genefilter multtest reposTools Survival genefilter multtest reposTools
19.1 years ago ivan.borozan@utoronto.ca ▴ 80
0
votes
3
replies
5.1k
views
ellipse package
reposTools reposTools
updated 19.1 years ago by ★ 13k • written 19.1 years ago by ▴ 20
0
votes
7
replies
1.4k
views
getBioC and install.packages2 fail
Proteomics reposTools Proteomics reposTools
updated 19.1 years ago by ★ 7.4k • written 19.1 years ago by ▴ 210
0
votes
0
replies
840
views
Follow-up to: [R] Annotation metadata "kills" help.search
Annotation GO hgu133plus2 reposTools Annotation GO hgu133plus2 reposTools
19.1 years ago Gerard Tromp ▴ 10
0
votes
3
replies
837
views
multtest dependencies
Survival genefilter multtest reposTools Survival genefilter multtest reposTools
19.1 years ago Francois Pepin ★ 1.3k
0
votes
0
replies
1.0k
views
reposTool package: permission problems on liblisting.Rda file
reposTools reposTools
19.1 years ago Conrad Halling ▴ 10
0
votes
0
replies
742
views
installing packages in bioconductor
reposTools reposTools
19.2 years ago Seth Falcon ★ 7.4k
0
votes
2
replies
892
views
error in installing Bioconductor development packages
Biobase annotate genefilter reposTools affy Biobase annotate genefilter reposTools affy
updated 19.2 years ago by ★ 7.4k • written 19.2 years ago by ▴ 10
0
votes
2
replies
1.0k
views
getBioC install problem in Fedora
reposTools reposTools
updated 19.2 years ago by ★ 5.5k • written 19.2 years ago by ▴ 320
0
votes
2
replies
1.0k
views
Need better quality control for reliable installation of bioconductor packages?
Cancer reposTools RdbiPgSQL PROcess twilight iSPlot Cancer reposTools RdbiPgSQL PROcess
updated 19.4 years ago by ★ 5.5k • written 19.4 years ago by 50k
0
votes
2
replies
992
views
Problems installing Bioconductor on linux(MEPIS)
reposTools reposTools
updated 19.5 years ago by ★ 5.5k • written 19.5 years ago by ▴ 420
0
votes
0
replies
1.1k
views
Installing Rv2.0.0 on MacOS 10.3.x
moe430a cdf probe annotate genefilter reposTools affy annaffy moe430a cdf probe affy
19.5 years ago rkakkar@uchicago.edu ▴ 100
0
votes
1
reply
675
views
where is GO 1.6.0 version required by annaffy , anyone know?
GO reposTools GO reposTools
updated 19.6 years ago by ▴ 360 • written 19.6 years ago by ★ 5.5k
0
votes
3
replies
993
views
Problem with BioC
reposTools reposTools
updated 19.6 years ago by ★ 3.9k • written 19.6 years ago by ▴ 100
0
votes
1
reply
710
views
bug in reposTools 1.4.11: missing getRversion
reposTools reposTools
updated 19.7 years ago by ★ 3.9k • written 19.7 years ago by ▴ 30
0
votes
1
reply
699
views
error with update.package2
reposTools reposTools
19.7 years ago Adaikalavan Ramasamy ★ 1.8k
0
votes
0
replies
631
views
Problem with genRepos function in reposTools package
reposTools reposTools
19.8 years ago Valtteri Wirta ▴ 30
0
votes
0
replies
719
views
repos tools
reposTools reposTools
19.8 years ago peter robinson ▴ 300
50 results • Page 1 of 1
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Comment: Differences in differential analysis methods for RNA-Seq by ATpoint ★ 4.1k
MAGeCK is a command line tool that is easy to use. I recommend you use it because a) the logFCs from DESeq2 and MAGeCK will be very similar…
Comment: Get genomic coordinates of CpGs sites (chromosomes, genomic position) by Yveto • 0
Thank for your response. It is Illumina 450 K. I use this code ```{r } library(IlluminaHumanMethylation450kanno.ilmn12.hg19) annotat…
Answer: More regions in union when increasing DBA$config$mergeOverlap by Rory Stark ★ 5.2k
I think the documentation is out of sync with the code. Positive values represent gaps between intervals and negative values represent how …
Comment: log2FoldChange value is way too different when compared with counts(dds) by Michael Love 41k
But just to be clear, this is not the same as regressing out batch from the VST (approx log transformed): ``` limma::removeBatchEffect(cou…
Comment: log2FoldChange value is way too different when compared with counts(dds) by HAK • 0
Thank you for the explanation, probably my brain just needed to accumulate enough info to understand what you are saying, but I finally got…
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A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
SPIA plotP giving error
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