Showing : repostools • reset
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1.3k
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Bioconductor web page
GO Cancer tkWidgets reposTools widgetTools simpleaffy affyQCReport affyio GO Cancer
18.7 years ago Seth Falcon ★ 7.4k
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votes
3
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1.3k
views
Problems by installing getBioC()
reposTools reposTools
updated 18.8 years ago by ★ 7.4k • written 18.8 years ago by ▴ 10
0
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2
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3.5k
views
Error in function (classes, fdef, mtable)
cdf genefilter reposTools gcrma matchprobes affyPLM simpleaffy affyio cdf genefilter
updated 19.2 years ago by ★ 7.4k • written 19.2 years ago by ▴ 360
0
votes
4
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1.7k
views
problems with Affy vignette and affybatch objects
GO Survival cdf Biobase annotate genefilter multtest reposTools affy affydata graph GO
updated 19.3 years ago by 25k • written 19.3 years ago by ★ 2.2k
0
votes
1
reply
957
views
syncLocalLibList in BioC 1.8 reposTools
reposTools reposTools
updated 19.3 years ago by ★ 7.4k • written 19.3 years ago by ▴ 890
0
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2
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1.2k
views
cdfenv files ATTN: James McDonald
SNP cdf probe reposTools affy SNP cdf probe reposTools affy
updated 19.4 years ago by 68k • written 19.4 years ago by ▴ 20
0
votes
1
reply
955
views
reposTools 1.10.0 pointing to BioC1.7 not 1.8
reposTools reposTools
updated 19.7 years ago by ★ 7.4k • written 19.7 years ago by ▴ 50
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votes
0
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1.2k
views
Why mm's changing after bg.adjust.gcrma?
drosgenome1 cdf Biobase reposTools affy gcrma affyPLM simpleaffy affyQCReport affyio cdf
19.7 years ago Jenny Drnevich ★ 2.2k
0
votes
2
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1.2k
views
problem with CoCiteStats in bioC 1.8
cdf reposTools affy CoCiteStats affyio cdf reposTools affy CoCiteStats affyio
updated 19.8 years ago by ★ 7.4k • written 19.8 years ago by ▴ 890
0
votes
3
replies
1.9k
views
error in mas5calls() for soybean chip
Survival hu6800 cdf probe Biobase genefilter reposTools affy affydata limma gcrma made4
updated 19.8 years ago by ▴ 70 • written 19.8 years ago by ★ 2.2k
0
votes
0
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1.6k
views
Problems using text to subset array information from anexpression set
Cancer cdf reposTools affy PROcess Cancer cdf reposTools affy PROcess
19.9 years ago Alvord, Greg DMS [Contr] ▴ 160
0
votes
4
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1.9k
views
Problems using text to subset array information from an expression set
cdf reposTools affy PROcess cdf reposTools affy PROcess
updated 19.9 years ago by ★ 4.3k • written 19.9 years ago by ▴ 110
0
votes
1
reply
1.4k
views
install package from local path with reposTools
reposTools reposTools
updated 20.0 years ago by ▴ 780 • written 20.0 years ago by ▴ 30
0
votes
3
replies
1.8k
views
widgetTools wFuns problem
DynDoc tkWidgets reposTools widgetTools DynDoc tkWidgets reposTools widgetTools
updated 20.0 years ago by ★ 2.9k • written 20.0 years ago by ▴ 80
0
votes
1
reply
1.2k
views
ReadAffy question
GO Ruuid DynDoc annotate genefilter multtest tkWidgets reposTools affy widgetTools limma
updated 20.1 years ago by 68k • written 20.1 years ago by ▴ 890
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1
reply
1.1k
views
Resourcerer warnings
GO Organism reposTools AnnBuilder Resourcerer GO Organism reposTools AnnBuilder
20.3 years ago Francois Pepin ★ 1.3k
0
votes
2
replies
1.5k
views
problem with annaffy aafFunction function
GO hgu95av2 rat2302 Biobase annotate reposTools affy annaffy GO hgu95av2 rat2302 affy
updated 20.3 years ago by 68k • written 20.3 years ago by ▴ 890
0
votes
1
reply
986
views
error in getMonograph() - many packages not available
Biobase reposTools affy Biobase reposTools affy
updated 20.3 years ago by ★ 7.4k • written 20.3 years ago by ★ 2.2k
0
votes
1
reply
1.1k
views
PLIER affinities
rae230a cdf probe reposTools affy plier rae230a cdf probe reposTools affy plier
updated 20.3 years ago by 68k • written 20.3 years ago by ▴ 80
0
votes
0
replies
864
views
memory problems on IRIX machine
cdf reposTools affy cdf reposTools affy
20.4 years ago Jenny Drnevich ★ 2.2k
0
votes
0
replies
1.2k
views
problem with get.genes.by.pathway
Biobase reposTools KEGGSOAP Biobase reposTools KEGGSOAP
20.4 years ago Kimpel, Mark W ▴ 890
0
votes
3
replies
1.3k
views
problem with package version of rat2302 1.8.5
Annotation rat2302 Biobase reposTools affy Annotation rat2302 Biobase reposTools affy
updated 20.4 years ago by ★ 7.4k • written 20.4 years ago by ▴ 890
0
votes
1
reply
920
views
[R] Bioconductor and R-devel
Microarray Cancer probe reposTools affy Microarray Cancer probe reposTools affy
20.5 years ago Seth Falcon ★ 7.4k
0
votes
1
reply
1.3k
views
File permission failures when building Bioconductor on AMD64/Opteron
reposTools affy reposTools affy
20.5 years ago Michael Redmond ▴ 20
0
votes
0
replies
903
views
moe430a and moe430av2 comparison
moe430a cdf probe reposTools affy moe430a cdf probe reposTools affy
20.5 years ago Margaret Gardiner-Garden ▴ 160
0
votes
2
replies
1.5k
views
zebrafish simpleaffy Error in FUN(X[[4]], ...) : subscript out of bounds
zebrafish cdf probe reposTools gcrma matchprobes simpleaffy zebrafish cdf probe gcrma
updated 20.5 years ago by ▴ 780 • written 20.6 years ago by ★ 1.4k
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votes
1
reply
1.6k
views
zebrafish simpleaffy Error in FUN(X[[4]], ...) : subscript out of bounds
zebrafish cdf probe reposTools gcrma matchprobes simpleaffy zebrafish cdf probe gcrma
updated 20.5 years ago by ★ 1.4k • written 20.5 years ago by ★ 1.1k
0
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1
reply
1.4k
views
Error in qc.affy(unnormalised, ...) : I'm sorry, I do not know about chip type: moe430acdf
GO moe430a cdf reposTools limma gcrma matchprobes siggenes simpleaffy GO moe430a cdf
updated 20.6 years ago by ★ 1.4k • written 20.6 years ago by ★ 1.1k
0
votes
0
replies
1.1k
views
Error in qc.affy(unnormalised, ...) : I'm sorry, I do not know about chip type: moe430acdf
GO moe430a cdf reposTools limma gcrma matchprobes siggenes simpleaffy GO moe430a cdf
20.6 years ago Dick Beyer ★ 1.4k
0
votes
0
replies
1.1k
views
annotation problem with hgu133plus2
GO cdf annotate reposTools affy siggenes annaffy GO cdf annotate reposTools affy
20.7 years ago Seth Falcon ★ 7.4k
0
votes
1
reply
947
views
Limma Load failed
reposTools reposTools
updated 20.8 years ago by ★ 7.4k • written 20.8 years ago by ▴ 10
0
votes
2
replies
1.1k
views
ReadAffy for moe430acdf
cdf reposTools affy cdf reposTools affy
updated 20.8 years ago by ★ 7.4k • written 20.8 years ago by ▴ 160
0
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0
replies
1.1k
views
question about multtest v.1.5.2
Survival genefilter multtest reposTools Survival genefilter multtest reposTools
20.9 years ago ivan.borozan@utoronto.ca ▴ 80
0
votes
3
replies
6.0k
views
ellipse package
reposTools reposTools
updated 20.9 years ago by ★ 13k • written 20.9 years ago by ▴ 20
0
votes
7
replies
1.9k
views
getBioC and install.packages2 fail
Proteomics reposTools Proteomics reposTools
updated 20.9 years ago by ★ 7.4k • written 20.9 years ago by ▴ 210
0
votes
0
replies
1.0k
views
Follow-up to: [R] Annotation metadata "kills" help.search
Annotation GO hgu133plus2 reposTools Annotation GO hgu133plus2 reposTools
20.9 years ago Gerard Tromp ▴ 10
0
votes
3
replies
1.2k
views
multtest dependencies
Survival genefilter multtest reposTools Survival genefilter multtest reposTools
20.9 years ago Francois Pepin ★ 1.3k
0
votes
0
replies
1.3k
views
reposTool package: permission problems on liblisting.Rda file
reposTools reposTools
20.9 years ago Conrad Halling ▴ 10
0
votes
0
replies
963
views
installing packages in bioconductor
reposTools reposTools
21.0 years ago Seth Falcon ★ 7.4k
0
votes
2
replies
1.2k
views
error in installing Bioconductor development packages
Biobase annotate genefilter reposTools affy Biobase annotate genefilter reposTools affy
updated 21.0 years ago by ★ 7.4k • written 21.0 years ago by ▴ 10
0
votes
2
replies
1.4k
views
getBioC install problem in Fedora
reposTools reposTools
updated 21.0 years ago by ★ 5.5k • written 21.0 years ago by ▴ 320
0
votes
2
replies
1.3k
views
Need better quality control for reliable installation of bioconductor packages?
Cancer reposTools RdbiPgSQL PROcess twilight iSPlot Cancer reposTools RdbiPgSQL PROcess
updated 21.2 years ago by ★ 5.5k • written 21.2 years ago by 53k
0
votes
2
replies
1.3k
views
Problems installing Bioconductor on linux(MEPIS)
reposTools reposTools
updated 21.2 years ago by ★ 5.5k • written 21.2 years ago by ▴ 420
0
votes
0
replies
1.5k
views
Installing Rv2.0.0 on MacOS 10.3.x
moe430a cdf probe annotate genefilter reposTools affy annaffy moe430a cdf probe affy
21.3 years ago rkakkar@uchicago.edu ▴ 100
0
votes
1
reply
943
views
where is GO 1.6.0 version required by annaffy , anyone know?
GO reposTools GO reposTools
updated 21.3 years ago by ▴ 360 • written 21.3 years ago by ★ 5.5k
0
votes
3
replies
1.3k
views
Problem with BioC
reposTools reposTools
updated 21.4 years ago by ★ 3.9k • written 21.4 years ago by ▴ 100
0
votes
1
reply
930
views
bug in reposTools 1.4.11: missing getRversion
reposTools reposTools
updated 21.4 years ago by ★ 3.9k • written 21.4 years ago by ▴ 30
0
votes
1
reply
919
views
error with update.package2
reposTools reposTools
21.4 years ago Adaikalavan Ramasamy ★ 1.8k
0
votes
0
replies
826
views
Problem with genRepos function in reposTools package
reposTools reposTools
21.6 years ago Valtteri Wirta ▴ 30
0
votes
0
replies
902
views
repos tools
reposTools reposTools
21.6 years ago peter robinson ▴ 300
106 results • Page 1 of 3
Recent ...
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Comment: GOseq Probability Weight Function bad fit by a2sahaaaq2c • 0
the mobile gaming world offers a different kind of strategic challenge. Many users today are shifting from heavy data processing to lighthe…
Comment: Postdoctoral Fellow (Computational Biology / Bioinformatics) - Neuroepigenetics by mudasarnaeem2020 • 0
Promoting UDISE+ Features on Social Media to Increase Awareness https://udisseplus.com/[enter link description here][1] [1]: https://ud…
Comment: DiffBind plot.profile error by a2sahaaaq2c • 0
To resolve technical errors like installation failures or login issues, first ensure your device allows in the security settings and that…
Comment: soGGi error by shepherl 4.3k
We have tried to contact the soGGi maintainer to have them update the package to the newer version of gglot2 but they have so far been unre…
Comment: using limma trend workflow in CAMERA by Gordon Smyth 53k
No, `trend.var=TRUE` and `trend=TRUE` are not needed in any voom pipeline, because the trend is already incorporated into the voom weights.
Votes
Answer: DiffBind differential analysis
Answer: Limma-voom sample weights and impact on DEG numbers
C: Why limma, edgeR, and DESeq did not implement fold change moderation first?
Comment: using limma trend workflow in CAMERA
C: z-score with DESeq2?
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