Bioconductor Rlelist

Showing : rlelist • reset

vote

replies

915

views

Views IRanges GRanges RleList

updated 2.6 years ago by Mike Smith ★ 6.5k • written 2.6 years ago by Assa Yeroslaviz ★ 1.5k

votes

replies

963

views

iranges s4vectors rle rlelist

5.8 years ago endrebak85 ▴ 40

votes

replies

1.9k

views

bug genomicranges granges rlelist coverage

updated 6.2 years ago by Hervé Pagès 16k • written 6.2 years ago by xiaotong.yao23 ▴ 10

votes

replies

1.6k

views

delayedarray rlelist rle

updated 6.5 years ago by Peter Hickey ▴ 740 • written 6.5 years ago by davide risso ▴ 950

votes

replies

1.5k

views

genomicranges biocgenerics rlelist genomicvars iranges

updated 6.6 years ago by Hervé Pagès 16k • written 6.6 years ago by Devin King ▴ 20

votes

1.0k

views

rlelist ifelse

updated 7.3 years ago by theobroma22 ▴ 10 • written 7.3 years ago by maltethodberg ▴ 170

votes

1.3k

views

Views genomicalignments IRangesList coverage RleList

updated 7.8 years ago by Hervé Pagès 16k • written 7.8 years ago by ccanchaya • 0

7 results • Page 1 of 1

Recent ...

Replies

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10

Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…

Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k

Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…

Answer: ATACseq merge peaks by ATpoint ★ 4.0k

That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…

Comment: Deseq2. decontXcounts not integers. Useful alternative? by camp ▴ 10

Yes, @atpoint is correct. decontX decontaminated counts are not integers due to the way the variation inference algorithm works, but you ca…

Comment: Deseq2. decontXcounts not integers. Useful alternative? by ATpoint ★ 4.0k

I do not know this decontamination tool you use but generally: If these counts are basically "corrected" raw counts in the sense that they'…

Votes

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length

Comment: Deseq2. decontXcounts not integers. Useful alternative?

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)

biomaRt error: database disk image is malformed

Comment: biomaRt : No lock file for BiocFileCache

Awards • All

Popular Question to James W. MacDonald 65k

Scholar to Michael Love 41k

Supporter to JKim • 0