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rmarkdown
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10
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3
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3.4k
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News:
Updates to BiocStyle formatting
BiocStyle
vignettes
rmarkdown
latex
News
7.4 years ago • updated 7.3 years ago
Andrzej Oleś
▴ 750
6
votes
1
reply
3.5k
views
Tutorial:
BoF "Writing papers in Rmarkdown, BiocStyle... (and books, posters)"
biocstyle
Rmarkdown
Tutorial
7.4 years ago
Wolfgang Huber
★ 13k
5
votes
3
replies
2.5k
views
Extension to knitr/Rmarkdown to ignore only specific warnings (not all) in a chunk
rmarkdown
suppressWarning
warning
updated 22 months ago by
Mike Smith
★ 6.6k • written 3.0 years ago by
Wolfgang Huber
★ 13k
3
votes
2
replies
2.0k
views
Issue with pandoc-citeproc when rendering the f1000 article Rmd file from BiocWorkFlowTools
BiocWorkflowTools
rmarkdown
updated 7.5 years ago by
Andrzej Oleś
▴ 750 • written 7.5 years ago by
Leonardo Collado Torres
★ 1.1k
3
votes
3
replies
16k
views
Error in Knit R Markdown document (could not find function "Biocexptpkg")
rmarkdown
rstudio
knitr
8.2 years ago
Jon Bråte
▴ 260
1
vote
2
replies
1.7k
views
Display BrowseSeqs output in R Notebook?
BrowseSeqs
DECIPHER
notebook
rmarkdown
updated 5.3 years ago by
Erik Wright
▴ 150 • written 5.3 years ago by
lauren.fitch
• 0
1
vote
1
reply
1.3k
views
Best practices for sharing RMarkdown-based supplemental PDFs?
rmarkdown
knitr
updated 5.9 years ago by
Aaron Lun
★ 28k • written 5.9 years ago by
Keith Hughitt
▴ 180
1
vote
1
reply
1.4k
views
Having issues mapping gene Ids during ReportingTools::publish() from Bioconductor.
ReportingTools
RNA-Seq
RMarkdown
updated 4.3 years ago by
James W. MacDonald
67k • written 4.3 years ago by
anthony.nash
▴ 20
0
votes
2
replies
4.0k
views
Error in file.choose() : file choice cancelled
package development
bioconductor
rstudio
rmarkdown
vignettes
7.1 years ago
clarisbaby
• 0
0
votes
2
replies
3.6k
views
installation of package 'rmarkdown' had non-zero exit status
rmarkdown
package updates
updated 8.3 years ago by
James W. MacDonald
67k • written 8.3 years ago by
tarek.mohamed
▴ 10
0
votes
0
replies
751
views
Author footnotes in BiocWorkflowTools::f1000_article template
BiocWorkflowTools
rmarkdown
4.5 years ago
helucro
▴ 70
11 results • Page
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Comment: Easiest way to convert read10xMolInfo data into a dataframe in R with gene label
by
daldabrown9
• 0
For more info visit us on [R350 status check][1] [1]: https://sassagrantstatuscheck.co.za/
Answer: Margins for gene_set_enrichment_plot
by
Leonardo Collado Torres
★ 1.1k
Hi, In version 1.19.4 of `spatialLIBD` @lahuuki re-implemented the `gene_set_enrichment_plot()` function using `ComplexHeatmap::Heatmap(…
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 20
Maria please read the mirTarRnaSeq paper. In particular, Supplemental Table 2, clarifies all the statistical models, inputs and outputs. If…
Comment: Help using rtracklayer for gene ID extraction
by
James W. MacDonald
67k
Telling me you can't do something without showing what you tried is not helpful. When posting here, try to put yourself in the shoes of peo…
Comment: miRTarRnaseq library
by
María Calvo
• 0
Hello Mercedeh, excuse me for not explaining it adecuately, Im using the "Part3 - Identify significant miRNA mRNA relationships for 2 time …
Votes
Whether to build DESeq2 model with all data and then contrast groups or subset groups first, build model and then contrast?
Answer: Feature Counts - potential bug with outfile.jcounts
Answer: Feature Counts - potential bug with outfile.jcounts
Answer: Pre-filtering TPM kallisto for ssGSEA / DESeq2
Answer: Mapping Between GenBank ID's and Uniprot
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