Showing : rna seq • reset
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How to create manhattan plot with DESeq2
deseq2 mahattan plot RNA Seq
updated 3.5 years ago by ▴ 150 • written 4.5 years ago by • 0
1
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5
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1.3k
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Time course experiment using limma with voom
limma voom RNA Seq Time-course experiments
updated 4.9 years ago by ★ 28k • written 4.9 years ago by • 0
2
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5
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3.2k
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Possible batch effect correction with RNA-Seq data when the batches do not contain both biological conditions for DE analysis
batch effect limma rna seq DE
updated 4.0 years ago by ★ 13k • written 4.0 years ago by ▴ 830
1
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4
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891
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Difference between Fold Changes from EdgeR glmLRTest and directly calculated fold changes.
edger RNA Seq
updated 4.4 years ago by 65k • written 4.4 years ago by ▴ 30
3
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3
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882
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Custom gene annotations for SGSeq
sgseq alternative splicing rna seq
updated 4.4 years ago by ▴ 200 • written 4.4 years ago by • 0
5
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3
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962
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Steep dendrograms and few modules. WGCNA on RNA seq data
RNA seq wgcna
updated 4.9 years ago by ★ 3.0k • written 4.9 years ago by ▴ 20
0
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3
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649
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Normalization of RNA seq data
RNA seq cpm
updated 4.1 years ago by ★ 3.9k • written 4.1 years ago by • 0
0
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2
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776
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using only uniquely-mapping reads for alternative splicing using SGSeq
rna seq SGSeq Alternative splicing
updated 4.5 years ago by ▴ 200 • written 4.5 years ago by • 0
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2
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1.9k
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adapter trimming paired vs unpaired reads
rna seq trimmomatic trimming adapter trimming paired analysis
5.0 years ago Mozart ▴ 30
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2
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945
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Need help cprrecting overlappinge genes on valcano plot
volcano plot rna seq
updated 4.7 years ago by 41k • written 4.7 years ago by • 0
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1
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549
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51 views DESeq2 RNAseq differential expression analysis
deseq2 likelihood ratio rna seq wald test
updated 4.6 years ago by 41k • written 4.6 years ago by • 0
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searching for specific RNA sequences
rna seq
4.5 years ago adeler001 • 0
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Sub clustering from hierarchical cluster used to make heat map of gene expression data
heatmap.2 hierarchical clustering microarray RNA seq DEG
6.2 years ago lawarde.ankita1 ▴ 30
13 results • Page 1 of 1
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Answer: DESeq2 v1.35.0 by Michael Love 41k
That is not a release (odd 'y' digit). See Bioconductor help pages: https://contributions.bioconductor.org/description.html#description-ver…
Comment: Although I successfully installed the package "simpleaffy'' , I cannot library i by James W. MacDonald 65k
Please don't piggyback on posts from 2.3 years ago. If you have a question, post as a new question.
Answer: DESeq2 v1.35.0 by James W. MacDonald 65k
Odd release versions indicate a devel version, which upon release is incremented to the next even version, so you won't be able to find tha…
Comment: Although I successfully installed the package "simpleaffy'' , I cannot library i by fatinataly • 0
I tried also with oligo does not work, any other suggestion?
Comment: More regions in union when increasing DBA$config$mergeOverlap by Ian D. ▴ 70
Hello. Thanks for the reply. Sorry about this. My testing is telling me that 1 is the default (a gap), not -1 (1bp overlap). Negative …
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Bioconductor 3.19 is Released!
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
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