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rnaseqrdata
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1
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4
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818
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RNA-seq analysis between a wildtype vs a double microRNA kockout mouse brain
microRNA
gene
RNASeqRData
edgeR
geneontology
18 months ago
faiza
• 0
1
vote
3
replies
679
views
What should I do with RNA-Seq data to get a gene that work?
find
RNASeqRData
updated 18 months ago by
ATpoint
★ 4.1k • written 18 months ago by
yuhang
• 0
1
vote
4
replies
1.4k
views
merge TPM values for same geneID
RNASeqRData
TPM
updated 19 months ago by
ATpoint
★ 4.1k • written 19 months ago by
prashali.bansal
▴ 10
0
votes
0
replies
473
views
how to create PHENO_DATA
RNASeq
RNASeqData
RNASeqRData
20 months ago
marymshahi2021
• 0
0
votes
1
reply
603
views
DeSeq2 timecourse analysis
RNAseqRData
DeSeq2
updated 2.1 years ago by
Michael Love
42k • written 2.1 years ago by
Hannah
• 0
0
votes
17
replies
3.2k
views
results(dds) error: couldn't find results. you should first run DESeq()
RNASeqRData
updated 2.2 years ago by
Michael Love
42k • written 2.2 years ago by
beslinail
• 0
1
vote
1
reply
790
views
edgeR for SDE analysis
RNASeqRData
edgeR
RNASeqR
RNASeqData
updated 2.2 years ago by
Gordon Smyth
50k • written 2.2 years ago by
vikycairoli
• 0
1
vote
2
replies
889
views
Is 100K genes too many to run ComBat_seq on?
RNASeqRData
combat_Seq
BatchEffect
2.6 years ago • updated 2.3 years ago
zeegzaag
• 0
0
votes
1
reply
870
views
Limma Voom Design and Contrast Matrix- Can my parameter also be a factor?
RNASeqRData
limma
RNASeq
RNASeqR
updated 3.1 years ago by
Gordon Smyth
50k • written 3.1 years ago by
Rita
• 0
2
votes
2
replies
2.7k
views
How to download KEGG pathways for list of enriched genes
RNASeqRData
GO
3.2 years ago
Wuschel
▴ 10
0
votes
0
replies
742
views
display .CT files in a BioC package
RNAinteract
rnaseqGene
RNASeqRData
rnaseqcomp
3.2 years ago
Bogdan
▴ 670
4
votes
4
replies
1.1k
views
DEseq2: working with unbalanced number of sample in tumor study?
Deseq2
RNASeqRData
unbalancedsamplesize
updated 23 months ago by
Michael Love
42k • written 3.3 years ago by
Cihat
• 0
1
vote
5
replies
2.1k
views
How can I use bioconductor and Deseq2 in linux ubuntu 18
RiboProfiling
DESeq2
Bioconductor
RNASeqRData
updated 18 months ago by
Kevin Blighe
★ 3.9k • written 3.3 years ago by
Taufiq
• 0
13 results • Page
1 of 1
Recent ...
Replies
Answer: Differential gene expression analysis results
by
ATpoint
★ 4.1k
Pease do not open multiple posts for the same issue: https://support.bioconductor.org/p/9158194/#9158222 The support site is not meant f…
Comment: deseq2 results
by
sajadahmad41454
• 0
thank you for your response, should i remove or discard that sample? since the red outlier on left represents one of healthy samples.
Comment: deseq2 results
by
swbarnes2
★ 1.4k
It looks like the PCA plot of a real RNASeq experiment. The red outlier on the left might be the mathematical reason why you have few vali…
Comment: Multi-factorial, longitudinal disease progression analysis with unbalanced patie
by
Dylan.Sheerin
• 0
Thank you very much, Gordon. I'll give voomLmFit a go!
Answer: Multi-factorial, longitudinal disease progression analysis with unbalanced patie
by
Gordon Smyth
50k
Including subjectID in the design matrix always accounts for unbalanced sampling and patient variation but subjects with incomplete records…
Votes
Comment: deseq2 results
Comment: deseq2 results
Answer: Multi-factorial, longitudinal disease progression analysis with unbalanced patie
Answer: Extremely small p-values using Limma for proteomic data
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