Bioconductor Rnaseqrdata

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microRNA gene RNASeqRData edgeR geneontology

18 months ago faiza • 0

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684

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find RNASeqRData

updated 18 months ago by ATpoint ★ 4.1k • written 18 months ago by yuhang • 0

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1.4k

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RNASeqRData TPM

updated 19 months ago by ATpoint ★ 4.1k • written 19 months ago by prashali.bansal ▴ 10

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476

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RNASeq RNASeqData RNASeqRData

20 months ago marymshahi2021 • 0

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603

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RNAseqRData DeSeq2

updated 2.1 years ago by Michael Love 42k • written 2.1 years ago by Hannah • 0

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3.2k

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RNASeqRData

updated 2.2 years ago by Michael Love 42k • written 2.2 years ago by beslinail • 0

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RNASeqRData edgeR RNASeqR RNASeqData

updated 2.2 years ago by Gordon Smyth 50k • written 2.2 years ago by vikycairoli • 0

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894

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RNASeqRData combat_Seq BatchEffect

2.6 years ago • updated 2.3 years ago zeegzaag • 0

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873

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RNASeqRData limma RNASeq RNASeqR

updated 3.1 years ago by Gordon Smyth 50k • written 3.1 years ago by Rita • 0

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RNASeqRData GO

3.2 years ago Wuschel ▴ 10

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RNAinteract rnaseqGene RNASeqRData rnaseqcomp

3.3 years ago Bogdan ▴ 670

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1.1k

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Deseq2 RNASeqRData unbalancedsamplesize

updated 24 months ago by Michael Love 42k • written 3.3 years ago by Cihat • 0

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2.1k

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RiboProfiling DESeq2 Bioconductor RNASeqRData

updated 18 months ago by Kevin Blighe ★ 3.9k • written 3.3 years ago by Taufiq • 0

13 results • Page 1 of 1

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Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 42k

To me, 100 and 200 kb both look fine. You want to have blocks smaller than segmentation regions.

Comment: ChAMP installation issue by e1271094 • 0

I discovered that the dataset data("probe.features.epicv1") is unavailable. Instead, the dataset data("probe.features.epic") is accessible.…

Comment: ChAMP installation issue by e1271094 • 0

I apologise for any inconvenience. I have successfully installed the ChAMP package. However, I am now encountering a new error: myLoad <- …

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0

Yes, blockLength=200000, and seg=seg. I am concerned about the inter-feature distance of features. I generated this plot for various bloc…

Answer: Can I trust the differential expression analysis when the two groups overlap on by Michael Love 42k

Can you use `vst` instead of `rlog` and increase to 1000 or 2000 genes? I'm wondering if there's a way to characterize these 7 samples. …

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A: Diffbind results - non uniform width

A: Different logFC (log2foldchange) values for genes from limma-voom and other too

Answer: Error EPICv2 ChAMP

Comment: Store output of matchPWM()

Answer: Store output of matchPWM()

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