Bioconductor Rnaseqrdata

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1.1k

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Deseq2 RNASeqRData unbalancedsamplesize

updated 23 months ago by Michael Love 41k • written 3.2 years ago by Cihat • 0

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2.6k

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RNASeqRData GO

3.2 years ago Wuschel ▴ 10

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2.1k

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RiboProfiling DESeq2 Bioconductor RNASeqRData

updated 18 months ago by Kevin Blighe ★ 3.9k • written 3.3 years ago by Taufiq • 0

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674

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find RNASeqRData

updated 18 months ago by ATpoint ★ 4.1k • written 18 months ago by yuhang • 0

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1.4k

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RNASeqRData TPM

updated 19 months ago by ATpoint ★ 4.1k • written 19 months ago by prashali.bansal ▴ 10

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809

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microRNA gene RNASeqRData edgeR geneontology

18 months ago faiza • 0

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787

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RNASeqRData edgeR RNASeqR RNASeqData

updated 2.2 years ago by Gordon Smyth 50k • written 2.2 years ago by vikycairoli • 0

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884

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RNASeqRData combat_Seq BatchEffect

2.6 years ago • updated 2.3 years ago zeegzaag • 0

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737

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RNAinteract rnaseqGene RNASeqRData rnaseqcomp

3.2 years ago Bogdan ▴ 670

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864

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RNASeqRData limma RNASeq RNASeqR

updated 3.1 years ago by Gordon Smyth 50k • written 3.1 years ago by Rita • 0

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3.2k

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RNASeqRData

updated 2.2 years ago by Michael Love 41k • written 2.2 years ago by beslinail • 0

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470

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RNASeq RNASeqData RNASeqRData

20 months ago marymshahi2021 • 0

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600

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RNAseqRData DeSeq2

updated 2.1 years ago by Michael Love 41k • written 2.1 years ago by Hannah • 0

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Answer: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0

Hi Michael, I think there is something wrong with the generation of nullranges. I was working with small RNA and methylation overlaps. …

Answer: Once again a "Model matrix not full rank" by swbarnes2 ★ 1.3k

Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…

Answer: limma Intercept vs No-intercept models completely changing DMR results? by Gordon Smyth 50k

I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …

Answer: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k

It is true that goseq isn't available for Bioc 3.19. That is because goseq depends on txbmaker, which is itself not yet available for Bioc…

Answer: limma Intercept vs No-intercept models completely changing DMR results? by James W. MacDonald 65k

This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…

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Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-

Answer: limma Intercept vs No-intercept models completely changing DMR results?

Answer: CombineArrays for EPIC and EPIC V2

Answer: Too many significant genes when integrating gtex and tcga

Comment: Too many significant genes when integrating gtex and tcga

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