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ruvnormalize
•
reset
1
vote
0
replies
656
views
RUVg spike-in assumption global expression
RUVSeq
RUVnormalize
19 months ago
Erdi
▴ 10
0
votes
0
replies
606
views
determine k during RUVSeq
RUVSeq
RUVnormalize
20 months ago
Ειρήνη
• 0
1
vote
2
replies
1.6k
views
Removing Unwanted Variations
DESeq2
NanoStringNCTools
RUVnormalize
RUVSeq
DifferentialExpression
2.8 years ago
AZ
▴ 20
0
votes
4
replies
3.9k
views
Confused about using RUVg in getting negative control genes using RUVg
RUVnormalize
R
edgeR
RUVSeq
RUVnormalizeData
3.6 years ago
Mohamed
▴ 30
0
votes
1
reply
914
views
Is RUVnormalize applicable to small dataset?
RUVnormalize
protein mi
7.3 years ago
losik
• 0
0
votes
2
replies
1.5k
views
RUVnormalize- How to output a corrected expression matrix without negative values to use for DEG analysis(i.e. limma) ?
RUVnormalize
limma
corrected expression matrix
microarray
updated 8.1 years ago by
Dario Strbenac
★ 1.6k • written 8.1 years ago by
massimo.acquaviva.78
• 0
2
votes
9
replies
3.7k
views
Zero inflation in RUV normalization and DE for single cell data
ruv
ruvseq
ruvnormalize
single-cell
zero-inflated
updated 8.5 years ago by
davide risso
▴ 980 • written 8.5 years ago by
Nik Tuzov
▴ 90
1
vote
3
replies
3.4k
views
Does it make sense to consider RUVr normalization for single cell RNA analysis?
RUV
ruvseq
ruvr
ruvnormalize
single cell
8.5 years ago
Nik Tuzov
▴ 90
2
votes
1
reply
1.7k
views
Decide normalisation method in RUVseq for RNAseq data
edger
ruvseq
rnaseq
normalization
ruvnormalize
updated 8.6 years ago by
davide risso
▴ 980 • written 8.6 years ago by
manish20072013
• 0
2
votes
1
reply
2.2k
views
RUVSeq empirical negative controls? how many to take to find the span set
ruvseq
RUV
ruvnormalize
ruvg
9.6 years ago
anthonycolombo60
• 0
2
votes
6
replies
2.2k
views
effect of polyploidy level on RUVs normalisation
normalization
ruvseq
ruvnormalize
ruvs eda
9.8 years ago
thomas.wolfe
• 0
0
votes
0
replies
1.8k
views
Technical Replicates and RUVs Normalisation
rnaseq
ruvnormalize
normalization
technical replicates
10.2 years ago
thomas.wolfe
• 0
1
vote
1
reply
1.7k
views
RUVnormalize- should input be pre-normalized?
ruvnormalize
microarray
normalization
updated 10.6 years ago by
laurent.jacob
▴ 10 • written 10.6 years ago by
Cornwell, Adam
▴ 110
2
votes
1
reply
1.6k
views
naiveRandRUV Error When k is 1
RUVNormalize
Subsetting
updated 10.6 years ago by
laurent.jacob
▴ 10 • written 10.7 years ago by
Dario Strbenac
★ 1.6k
14 results • Page
1 of 1
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Replies
Comment: msmsTests, inconsistent sign between lFC.Av and LogFC
by
Ben
• 0
Continued here due to posting difficulties: Extract from the results table: ``` Inhibitor Vehicle lFC.Av LogFC ... F1 0.0 27…
Answer: DESeq2 for 16S rRNA Analysis
by
James W. MacDonald
68k
The Wald test is only meant for comparison of two groups at a time, so it depends on what you mean by 'analyze across multiple groups at a …
Comment: MetaDE.pvalue: Error in xj[i]: invalid subscript type 'list'
by
varying.mastodon.isyn
• 0
Oh, that error! I remember wrestling with that one for hours when I was first learning Python. Turns out I was trying to use a list itself …
Comment: Confirm that OpenStats will not be archived (pryr dependency)
by
Marina
• 0
Thank you!
Comment: AnnotationForge makeOrgPackage rsqlite_send_query error
by
ansley.r.burtch
• 0
Hi! I am sure you are well into your career now and haven't worked on this for a while, but I wanted to let you know this is still helping …
Votes
A: DESeq2 - VST eliminates zero values
Comment: Normalise to a housekeeping gene in DESEq2
Comment: limpa analysis advice
C: AnnotationForge makeOrgPackage rsqlite_send_query error
Answer: Limpa Pipeline Order
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