Bioconductor Ruvnormalize

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RUVSeq RUVnormalize

16 months ago Erdi ▴ 10

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518

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RUVSeq RUVnormalize

17 months ago Ειρήνη • 0

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1.5k

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DESeq2 NanoStringNCTools RUVnormalize RUVSeq DifferentialExpression

2.6 years ago AZ ▴ 30

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3.6k

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RUVnormalize R edgeR RUVSeq RUVnormalizeData

3.4 years ago • updated 3.3 years ago Mohamed ▴ 30

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863

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RUVnormalize protein mi

7.0 years ago losik • 0

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1.4k

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RUVnormalize limma corrected expression matrix microarray

updated 7.8 years ago by Dario Strbenac ★ 1.6k • written 7.8 years ago by massimo.acquaviva.78 • 0

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3.5k

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ruv ruvseq ruvnormalize single-cell zero-inflated

updated 8.2 years ago by davide risso ▴ 980 • written 8.2 years ago by Nik Tuzov ▴ 90

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3.2k

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RUV ruvseq ruvr ruvnormalize single cell

8.3 years ago Nik Tuzov ▴ 90

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1.7k

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edger ruvseq rnaseq normalization ruvnormalize

updated 8.4 years ago by davide risso ▴ 980 • written 8.4 years ago by manish20072013 • 0

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2.1k

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ruvseq RUV ruvnormalize ruvg

9.3 years ago anthonycolombo60 • 0

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2.1k

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normalization ruvseq ruvnormalize ruvs eda

9.5 years ago thomas.wolfe • 0

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1.7k

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rnaseq ruvnormalize normalization technical replicates

9.9 years ago thomas.wolfe • 0

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1.6k

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ruvnormalize microarray normalization

updated 10.3 years ago by laurent.jacob ▴ 10 • written 10.4 years ago by Cornwell, Adam ▴ 110

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1.6k

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RUVNormalize Subsetting

updated 10.3 years ago by laurent.jacob ▴ 10 • written 10.4 years ago by Dario Strbenac ★ 1.6k

14 results • Page 1 of 1

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Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112

Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

we can investigate this issue. thank you for bringing it to our attention

Comment: deseq2 filter the low counts by Michael Love 43k

> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…

Comment: deseq2 filter the low counts by empty_mt • 0

Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …

Comment: deseq2 filter the low counts by Michael Love 43k

Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering

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Bioconductor 3.22 Released!

Comment: "Watched Tags" are being erased rather than updated

Comment: deseq2 filter the low counts

Answer: DESeq2 interactions

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