Showing : Outliers • reset
3
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2
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handling outliers with DESeq2
RNASeqData DESeq2 Outliers
4 months ago paty ▴ 20
0
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2
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168
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Outliers
outliers Deseq2
5 months ago nolwenn • 0
7
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8
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579
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Cook's Distance Outliers: None reported in results table and "cooksCutoff" modification has no effect
deseq2 outliers cooks cooks distance
updated 13 months ago by 34k • written 13 months ago by • 0
2
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3
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798
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DESeq2 count outlier replacement from Cook's threshold
deseq2 deseq rnaseq outliers count outliers
updated 2.8 years ago by 34k • written 2.8 years ago by ▴ 10
1
vote
7
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677
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skewed differentially expressed gene results - DESeq2
deseq2 differential gene expression outliers
updated 3.1 years ago by 7.6k • written 3.1 years ago by ▴ 20
0
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1
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553
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Deseq2 default Cooks distance threshold
Deseq2 outliers cookscutoff
updated 3.1 years ago by 34k • written 3.1 years ago by • 0
1
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2
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514
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Odd Sample after SWAN normalisation, DNA methylation analysis EPIC array
minfi normalization outliers dna methylation densityplot
3.2 years ago peter.fransquet • 0
0
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1
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314
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Removal of outliers after library size correction, can I save this to my dds object?
deseq2 outliers
updated 3.5 years ago by 34k • written 3.5 years ago by • 0
0
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6
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700
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weird behaviour DESeq2 1.18.1
deseq2 outliers version
updated 3.6 years ago by 34k • written 3.6 years ago by ▴ 70
0
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4
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540
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significant genes with DESeq2 plenty of outliers and zero counts
zero counts deseq2 odd results outliers
updated 3.6 years ago by 34k • written 3.6 years ago by ▴ 70
0
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1
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460
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Handling outliers in Deseq2
outliers deseq2 logfoldchange
3.7 years ago lirongrossmann ▴ 60
0
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10
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1.1k
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Differential expression due to extreme outliers in DESeq2
deseq2 outliers
3.7 years ago paul.alto ▴ 50
1
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3
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2.4k
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DESeq2: How to manually perform filtering and outlier detection?
deseq2 filtering outliers count outliers
updated 4.1 years ago by 13k • written 4.1 years ago by • 0
0
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4
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1.3k
views
DESeq2, outlier correction, Combat, NMF
deseq2 combat outliers NMF
updated 4.3 years ago by 34k • written 4.3 years ago by • 0
1
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1
reply
643
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Outliers - to remove or to not remove that is the question
outliers rna microarray
updated 4.3 years ago by ▴ 390 • written 4.3 years ago by ▴ 30
1
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8
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1.3k
views
[DESeq2] Automatic outlier detection and replacement with continuous variables
deseq2 outliers RNAseq differential gene expression
4.5 years ago cajawe • 0
0
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9
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1.0k
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DESeq2 influence of 2 samples
deseq2 outliers differential gene expression
updated 4.6 years ago by 34k • written 4.6 years ago by ▴ 10
0
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7
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1.9k
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Deciding on cooks cutoff value DESeq2
deseq2 differential gene expression outliers bioconductor
updated 4.6 years ago by 34k • written 4.6 years ago by ▴ 10
0
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3
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633
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DESeq outlier detection for unbalanced groups
deseq2 deseq outliers
updated 5.2 years ago by 34k • written 5.2 years ago by ▴ 30
3
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3
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1.1k
views
How to define an outlier array from PCA?
microarray PCA outliers sample outliers limma
updated 5.6 years ago by ★ 27k • written 5.6 years ago by ▴ 60
6
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17
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10k
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WGCNA for RNA-Seq Sample Set, Outliers, and Spearman correlation
WGCNA Sample Size Outliers
updated 6.0 years ago by • 0 • written 6.6 years ago by ▴ 80
0
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0
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1.6k
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Modeling count data that is zero inflated with negative binomial hurdle regression
pscl outliers
updated 6.5 years ago by 21k • written 6.5 years ago by ▴ 30
22 results • Page 1 of 1
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Comment: Diffbind dba.plotProfile attempt to select less than one element in OneIndex by bhanratt • 0
``` > DBA 10 Samples, 31953 sites in matrix: ID Tissue Factor Condition Replicate Reads FRiP 1 58 1 H3K4me3 AD …
Answer: Warning messages on Apple M1 BigSur by Vincent J. Carey, Jr. 6.5k
We are not producing M1 binaries at this time. If you use the intel version of R under Rosetta 2 you can use the intel mac binaries.
Comment: Issue::DesignPrimers DECIPHER by slwmartin • 0
Hey, I'm having this issue too. I've tried reinstalling using Conda a few times without luck. Did you reinstall with Conda or from the tar …
Comment: Log fold change interpretation of time series with Wald test by jd348 • 0
So would you recommend still using Log2fold change as a measurement for effect size?
Answer: Error in `*tmp*`$samples : $ operator is invalid for atomic vectors by James W. MacDonald 58k
I believe you want ``` > x <- as.matrix(read.delim("E:/bioinformatic/RNAseq/GSE168008_raw_count.txt", sep ="" ,row.names = 1)) > sampl…
Votes
Comment: Use of coef() as a measure of effect size in a multiple regression using DESeq2
Answer: Log fold change interpretation of time series with Wald test
A: gviz: name of tracks disappeas
Answer: Degust: what normalization method does it use
Answer: ylim and xlim in Enhanced Volcano
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