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Outliers
•
reset
0
votes
3
replies
187
views
dealing with outliers (deseq2)
maxcooks
outliers
zero
counts
DESeq2
updated 8 weeks ago by
Michael Love
36k • written 9 weeks ago by
andreia
• 0
1
vote
2
replies
230
views
rlog vs vst for outlier identification
rlog
DESeq2
vst
outliers
4 months ago
Bex
• 0
3
votes
2
replies
1.6k
views
handling outliers with DESeq2
RNASeqData
DESeq2
Outliers
12 months ago
paty
▴ 20
0
votes
2
replies
253
views
Outliers
outliers
Deseq2
13 months ago
nolwenn
• 0
7
votes
8
replies
880
views
Cook's Distance Outliers: None reported in results table and "cooksCutoff" modification has no effect
deseq2
outliers
cooks
cooks distance
updated 21 months ago by
Michael Love
36k • written 21 months ago by
donnenfieldjonah
• 0
2
votes
3
replies
999
views
DESeq2 count outlier replacement from Cook's threshold
deseq2
deseq
rnaseq
outliers
count outliers
updated 3.5 years ago by
Michael Love
36k • written 3.5 years ago by
lefeverde
▴ 10
1
vote
7
replies
842
views
skewed differentially expressed gene results - DESeq2
deseq2
differential gene expression
outliers
updated 3.8 years ago by
Ryan C. Thompson
7.8k • written 3.8 years ago by
CE
▴ 20
0
votes
1
reply
728
views
Deseq2 default Cooks distance threshold
Deseq2
outliers
cookscutoff
updated 3.8 years ago by
Michael Love
36k • written 3.8 years ago by
jaime.alvarez.benayas
• 0
1
vote
2
replies
623
views
Odd Sample after SWAN normalisation, DNA methylation analysis EPIC array
minfi
normalization
outliers
dna methylation
densityplot
3.8 years ago
peter.fransquet
• 0
0
votes
1
reply
381
views
Removal of outliers after library size correction, can I save this to my dds object?
deseq2
outliers
updated 4.2 years ago by
Michael Love
36k • written 4.2 years ago by
Moose123
• 0
0
votes
6
replies
828
views
weird behaviour DESeq2 1.18.1
deseq2
outliers
version
updated 4.2 years ago by
Michael Love
36k • written 4.2 years ago by
aec
▴ 90
0
votes
4
replies
689
views
significant genes with DESeq2 plenty of outliers and zero counts
zero counts
deseq2
odd results
outliers
updated 4.3 years ago by
Michael Love
36k • written 4.3 years ago by
aec
▴ 90
0
votes
1
reply
582
views
Handling outliers in Deseq2
outliers
deseq2
logfoldchange
4.3 years ago
lirongrossmann
▴ 60
0
votes
10
replies
6.5k
views
Differential expression due to extreme outliers in DESeq2
deseq2
outliers
4.4 years ago
paul.alto
▴ 50
1
vote
3
replies
3.1k
views
DESeq2: How to manually perform filtering and outlier detection?
deseq2
filtering
outliers
count outliers
updated 4.8 years ago by
Wolfgang Huber
13k • written 4.8 years ago by
heikki.sarin
▴ 10
0
votes
4
replies
1.5k
views
DESeq2, outlier correction, Combat, NMF
deseq2
combat
outliers
NMF
updated 5.0 years ago by
Michael Love
36k • written 5.0 years ago by
noname
• 0
1
vote
1
reply
728
views
Outliers - to remove or to not remove that is the question
outliers
rna
microarray
updated 5.0 years ago by
chris86
▴ 400 • written 5.0 years ago by
bhgyu
▴ 30
1
vote
8
replies
1.6k
views
[DESeq2] Automatic outlier detection and replacement with continuous variables
deseq2
outliers
RNAseq
differential gene expression
5.2 years ago
cajawe
• 0
0
votes
9
replies
1.2k
views
DESeq2 influence of 2 samples
deseq2
outliers
differential gene expression
updated 5.3 years ago by
Michael Love
36k • written 5.3 years ago by
gregory.l.stone
▴ 10
0
votes
7
replies
2.2k
views
Deciding on cooks cutoff value DESeq2
deseq2
differential gene expression
outliers
bioconductor
updated 5.3 years ago by
Michael Love
36k • written 5.3 years ago by
gregory.l.stone
▴ 10
0
votes
3
replies
710
views
DESeq outlier detection for unbalanced groups
deseq2
deseq
outliers
updated 5.8 years ago by
Michael Love
36k • written 5.8 years ago by
akaever
▴ 30
3
votes
3
replies
1.2k
views
How to define an outlier array from PCA?
microarray
PCA
outliers
sample outliers
limma
updated 6.3 years ago by
Aaron Lun
★ 27k • written 6.3 years ago by
serpalma.v
▴ 60
6
votes
17
replies
11k
views
WGCNA for RNA-Seq Sample Set, Outliers, and Spearman correlation
WGCNA
Sample Size
Outliers
updated 6.7 years ago by
mh.manoj
• 0 • written 7.2 years ago by
brohawndg
▴ 80
0
votes
0
replies
1.7k
views
Modeling count data that is zero inflated with negative binomial hurdle regression
pscl
outliers
updated 7.2 years ago by
Sean Davis
21k • written 7.2 years ago by
mrk.carty
▴ 30
24 results • Page
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Comment: R: problem with running time-series analysis software: Mfuzz
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Cross-posted: https://www.biostars.org/p/9524023/
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Eddie
• 0
Hi, That was helpful. Thank you. How to do the same for the testing data?
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After going through the package, I think all the peaks are annotated to genes irrespective of distance to TSS. There is also another functi…
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