Bioconductor ScRNA

Showing : scRNA • reset

votes

4.6k

views

scRNA monocle packages Tutorial

4.7 years ago 444579004 • 0

votes

4.2k

views

MAST scRNA GSEA

updated 6.8 years ago by Andrew_McDavid ▴ 270 • written 6.8 years ago by siajunren • 0

votes

replies

2.3k

views

DropletUtils emptyDrops scRNA scRNAseq 10x

21 months ago • updated 20 months ago Peter Hickey ▴ 740

votes

replies

2.3k

views

DESeq2 Scrna scRNAseq

2.8 years ago RDoc ▴ 10

vote

replies

1.7k

views

scRNA zinbwave batch IntegratedData

updated 3.6 years ago by davide risso ▴ 950 • written 3.6 years ago by Assa Yeroslaviz ★ 1.5k

votes

replies

1.7k

views

Seurat scRNA debugging exceptions unit-test

updated 4.5 years ago by Martin Morgan 25k • written 4.5 years ago by moldach ▴ 20

vote

replies

1.5k

views

scrna scrnaseq differential gene expression

updated 6.5 years ago by davide risso ▴ 950 • written 6.5 years ago by d.depledge • 0

vote

replies

1.5k

views

scater scrna

updated 7.3 years ago by Aaron Lun ★ 28k • written 7.3 years ago by hrishi27n ▴ 20

votes

replies

1.0k

views

scRNAseq scrna paireddesign edgeR pseudobulking

updated 9 months ago by Gordon Smyth 50k • written 9 months ago by garcia • 0

vote

1.0k

views

scRNAseq scRNA batchelor BatchEffect

updated 3.5 years ago by Aaron Lun ★ 28k • written 3.5 years ago by Adrien • 0

votes

897

views

SCRNA

updated 6.5 years ago by Aaron Lun ★ 28k • written 6.5 years ago by sumetha • 0

vote

replies

811

views

scRNAseq quickcluster scRNA scran

5 months ago ruba-mahmoud • 0

votes

replies

684

views

scrna scRNAseq

updated 6 months ago by Gabriella • 0 • written 14 months ago by sarah.jobbins • 0

vote

replies

672

views

scran Normalization scRNA BatchEffect

16 months ago r_grau ▴ 10

votes

420

views

scRNA scRNAseq

updated 9 months ago by ATpoint ★ 4.1k • written 9 months ago by Omer • 0

15 results • Page 1 of 1

Recent ...

Replies

Answer: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0

Hi Michael, I think there is something wrong with the generation of nullranges. I was working with small RNA and methylation overlaps. …

Answer: Once again a "Model matrix not full rank" by swbarnes2 ★ 1.3k

Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…

Answer: limma Intercept vs No-intercept models completely changing DMR results? by Gordon Smyth 50k

I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …

Answer: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k

It is true that goseq isn't available for Bioc 3.19 (as at 4 May 2024). In the meantime, you could consider using the goana() and kegga() …

Answer: limma Intercept vs No-intercept models completely changing DMR results? by James W. MacDonald 65k

This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…

Votes

Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-

Answer: limma Intercept vs No-intercept models completely changing DMR results?

Answer: CombineArrays for EPIC and EPIC V2

Answer: Too many significant genes when integrating gtex and tcga

Comment: Too many significant genes when integrating gtex and tcga

Awards • All