Bioconductor SimpleSingleCell

Showing : simpleSingleCell • reset

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1.6k

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SingleCellExperiment scran limma simpleSingleCell

updated 4.9 years ago by Aaron Lun ★ 28k • written 4.9 years ago by Matt Mulé • 0

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3.1k

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scater simpleSingleCell workflows

updated 6.9 years ago by Aaron Lun ★ 28k • written 6.9 years ago by sandmann.t ▴ 70

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1.8k

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scater singlecellexperiment simplesinglecell

updated 6.2 years ago by Aaron Lun ★ 28k • written 6.2 years ago by Xingyu • 0

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952

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simplesinglecell

updated 6.1 years ago by Aaron Lun ★ 28k • written 6.1 years ago by Xingyu • 0

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855

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workflows simplesinglecell

updated 5.6 years ago by Aaron Lun ★ 28k • written 5.6 years ago by es.azadian • 0

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2.4k

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singlecellexperiment dropletutils simplesinglecell

updated 5.6 years ago by Aaron Lun ★ 28k • written 5.6 years ago by Peter Hickey ▴ 740

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1.7k

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DropletUtils SingleCellExperiement DelayedArray simpleSingleCell

updated 4.9 years ago by Aaron Lun ★ 28k • written 4.9 years ago by Steve Pederson ▴ 170

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2.8k

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limma edgeR simplesingleCell scran scater

updated 4.8 years ago by Aaron Lun ★ 28k • written 4.8 years ago by Bogdan ▴ 670

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1.6k

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scran simpleSingleCell

updated 4.8 years ago by Aaron Lun ★ 28k • written 4.8 years ago by Angelos Armen • 0

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4.5k

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DropletUtils EmptyDrops simpleSingleCell

updated 21 months ago by Stefano Mangiola ▴ 10 • written 4.8 years ago by shbrief ▴ 20

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675

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simpleSingleCell

updated 4.7 years ago by Aaron Lun ★ 28k • written 4.7 years ago by Angelos Armen • 0

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simpleSingleCell

updated 4.7 years ago by Aaron Lun ★ 28k • written 4.7 years ago by Angelos Armen • 0

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DropletUtils scRNA-seq emptyDrops simplesinglecell cell calling

updated 3.5 years ago by Aaron Lun ★ 28k • written 4.7 years ago by C T ▴ 140

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Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it by Hervé Pagès 16k

Indeed. Calculations involving floating point arithmetic are architecture-dependent, and testing the results should be done with `all.equal…

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0

I will follow what you suggested. I didn't use max gap anywhere. I was following statistic I and regarding the size of features, my small…

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 41k

Oh I see, for the second question, I don't have a great answer. I typically think of one set as the anchor, whose ascertainment is driving …

Comment: Help with running egsea() by James W. MacDonald 65k

Oh, right. Ideally you would use NCBI (aka Entrez gene) IDs because they are way more likely to be unique. Gene symbols are broken down int…

Comment: Help with running egsea() by Chris • 0

Thanks James! I update the question. The last question mean when we use `buildIdx()`, could we use gene symbol instead of entrezID. However…

Votes

Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it

Comment: Help with running egsea()

Answer: Trim/Filter out-of-bounds GRanges

Comment: Help with running egsea()

Answer: How to save the DEXSeq results

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Scholar to Michael Love 41k

Popular Question to Malcolm Cook ★ 1.6k

Teacher to Gordon Smyth 50k