Showing : snprelate • reset
0
votes
9
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6.2k
views
unable to update mgcv package
mgcv snprelate
updated 8.4 years ago by 25k • written 8.4 years ago by • 0
0
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1
reply
3.7k
views
SNPrelate, snpgdsFst is excluding all snps on non-autosomes, how can I get it to stop doing that?
snprelate fst
updated 5.6 years ago by ▴ 30 • written 5.6 years ago by • 0
0
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4
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2.4k
views
NA values in snpgdsDiss dissimilarity matrix
snprelate
updated 8.5 years ago by ▴ 30 • written 8.5 years ago by ▴ 10
0
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0
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1.9k
views
GWASTools
Organism GWASTools Organism GWASTools SNPRelate
11.1 years ago Stephanie M. Gogarten ▴ 870
3
votes
2
replies
1.8k
views
Minimum allele frequency (MAF) from a Genomic Data Structure (GDS) file
snprelate GWASTools
updated 8.0 years ago by ▴ 30 • written 8.0 years ago by ▴ 40
1
vote
2
replies
1.6k
views
Cannot read plink files correctly
snprelate Tutorial
updated 6.9 years ago by ▴ 30 • written 6.9 years ago by • 0
0
votes
2
replies
1.6k
views
Error converting vcf to gds
snprelate vcf gds
updated 6.1 years ago by ▴ 30 • written 6.1 years ago by • 0
1
vote
1
reply
1.6k
views
VCF file does not include snp.id, can I still run SNPRelate for Relatedness Analysis? Data is output from STACKS for mangroves
SNPRelate VCF
updated 5.1 years ago by ▴ 870 • written 5.1 years ago by • 0
0
votes
1
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1.5k
views
SNPRelate Dendrogram Point Colors and Shapes
SNPRelate R
updated 7.9 years ago by ▴ 30 • written 7.9 years ago by • 0
0
votes
1
reply
1.3k
views
Write gds in parallel
gds SNPRelate BiocParallel
updated 6.0 years ago by ▴ 30 • written 6.0 years ago by ▴ 40
0
votes
1
reply
1.1k
views
SNP annotation
SNPRelate SNP GWASTools Annotation GWASdata
updated 2.3 years ago by ▴ 870 • written 2.4 years ago by • 0
3
votes
1
reply
1.0k
views
How to add colors to the PCA made using SNPRelate
snprelate
updated 3.6 years ago by 65k • written 3.6 years ago by • 0
1
vote
1
reply
987
views
PCA axis description SNPRelate
SNPRelate PCA
updated 5.1 years ago by ▴ 870 • written 5.1 years ago by ▴ 60
0
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2
replies
951
views
How to project a new vector onto PCA space using snpgdsPCA( )?
SNPRelate
updated 2.2 years ago by ▴ 870 • written 2.2 years ago by • 0
0
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0
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935
views
RADseq chromosomes unknown
snprelate RADseq Stacks
8.5 years ago clive.darwell • 0
0
votes
1
reply
932
views
error when running snpgdsLDpruning: The GDS node "genotype/data" does not exist.
SNPRelate
updated 3.4 years ago by • 0 • written 3.4 years ago by • 0
0
votes
1
reply
910
views
Using previously calculated PCs in GENESIS
genesis snprelate
5.6 years ago Stephanie M. Gogarten ▴ 870
0
votes
1
reply
872
views
Different order of samples in output of snpgdsSlidingWindow to calculate Fst and aggregation method
SNPRelate
updated 5.0 years ago by ▴ 30 • written 5.0 years ago by ▴ 60
0
votes
0
replies
812
views
SNPRelate handling of missing genotypes
SNPRelate
2.3 years ago serpalma.v ▴ 60
1
vote
1
reply
810
views
What does SNPRelate::snpgdsDiss calculate?
SNPRelate
updated 4.9 years ago by ▴ 30 • written 4.9 years ago by • 0
0
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0
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698
views
#SeqSQC error: Problem while converting vcf format to gds format
SNPRelate gdsfmt SeqSQC
2.6 years ago Bhargavi • 0
0
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0
replies
480
views
Database for exploring annotations of the coding genome at variants, such as candidate regulatory SNPs at disease-associated loci.
SNP ExomeSeqData snapcount SNAData SNPRelate
18 months ago m610110001 • 0
22 results • Page 1 of 1
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Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 42k
> Any suggestions for methylation data segmentation? I think the same segmentation can be used.
Comment: deseq2 results by swbarnes2 ★ 1.3k
Cross-posted https://www.biostars.org/p/9594331/#9594458
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it by Mike Smith ★ 6.5k
The other answers here are all good and demonstrate the issue with floating point comparisons nicely. I'd like to add that your particular…
Comment: More regions in union when increasing DBA$config$mergeOverlap by Ian D. ▴ 70
Nudging my question. I could do with confirmation before proceeding with my current projects. Thank you.
Comment: Extremely small p-values using Limma for proteomic data by Robert Castelo ★ 3.3k
From the point of view of visualization, I find handy the fact that raw p-values give more resolution than adjusted ones, which allows one …
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A: Volcanoplot with limma - RAW P-values or Adj.P-Values
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Answer: minfi latest update for EPIC V2 chip
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