Bioconductor Snps

Showing : snps • reset

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3.0k

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snps VCF

updated 2.6 years ago by Arafat • 0 • written 7.8 years ago by rkdonthu ▴ 10

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751

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hierClust R SNPs clustering

updated 2.7 years ago by James W. MacDonald 67k • written 2.7 years ago by sekhwal • 0

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1.1k

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SNPs

5.8 years ago pltbiotech_tkarthi • 0

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1.4k

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snps vcf venn diagram ggplot2

6.0 years ago mictadlo ▴ 10

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1.4k

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bioconductor molecular biology snps

updated 6.1 years ago by James W. MacDonald 67k • written 6.1 years ago by jebreen20 • 0

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2.9k

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motifbreakR vcf snps motif analysis

updated 6.5 years ago by Valerie Obenchain ★ 6.8k • written 6.5 years ago by svlachavas ▴ 840

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1.6k

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variantannotation SNPs txdb.hsapiens.ucsc.hg19.knowngene ucsc

updated 7.5 years ago by Valerie Obenchain ★ 6.8k • written 7.5 years ago by Lna • 0

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1.6k

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hsapiens snps indels

updated 9.1 years ago by Hervé Pagès 16k • written 9.1 years ago by kredens • 0

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1.7k

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Biostrings SNPs alignment

updated 9.4 years ago by Hervé Pagès 16k • written 9.4 years ago by ben.ward ▴ 30

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2.0k

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gviz ideogram snps

updated 9.9 years ago by florian.hahne@novartis.com ★ 1.6k • written 9.9 years ago by vnyirongo • 0

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2.4k

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overlap snps granges iranges

updated 10.2 years ago by Michael Lawrence ★ 11k • written 10.2 years ago by anastasiya-terskih ▴ 10

11 results • Page 1 of 1

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Comment: ChAMP.DMR error - Error in makeGenomicRatioSetFromMatrix by O'Brien • 0

Consult the ChAMP.DMR documentation for more information on supported array types and expected data formats: https://bioconductor.org/packa…

Answer: combining raw counts and estimated counts by O'Brien • 0

It is possible to combine raw counts from TCGA and estimated counts from GEO datasets (Kalisto pseudoalignment) while mitigating batch effe…

Comment: Packages don't update, but no error or warning is thrown by neighsanlo • 0

This is useful information.

Comment: Perform gene set enrichment analysis using fgsea on two conditions that don't ha by freemanmclaughlin9969289 • 0

Tools such as Pathway Analysis with Deweighting of Overlapping Genes ([block blast][1]) or Gene Set Enrichment Analysis for Single Cell RNA…

Comment: How to get around the warning message: mzR has been built against a different Rc by Nan • 0

Hello, I was wondering if you were able to resolve this issue? I've recently encountered a similar problem and would like to ask for your a…

Votes

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio

C: edgeR and lack of counts ID on CPM matrix

A: DESeq2 Following RSEM

A: importing RSEM data into DESeq2

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Teacher to dsull ▴ 40