Showing : snps • reset
1
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2
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3.6k
views
Any tool to calculate Fst on haploid data?
snps VCF
updated 3.7 years ago by • 0 • written 9.0 years ago by ▴ 10
0
votes
1
reply
964
views
Error running hierClust
hierClust R SNPs clustering
updated 3.9 years ago by 68k • written 3.9 years ago by • 0
0
votes
0
replies
1.6k
views
How to extract genomic positions of SNPs using snp-sites or using any R package?
SNPs
6.9 years ago pltbiotech_tkarthi • 0
0
votes
0
replies
1.7k
views
vcf to venn diagram
snps vcf venn diagram ggplot2
7.1 years ago mictadlo ▴ 10
0
votes
6
replies
1.7k
views
Physical position to gene positions
bioconductor molecular biology snps
updated 7.2 years ago by 68k • written 7.2 years ago by • 0
2
votes
5
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3.4k
views
Error with R package motifbreakR while trying to read a vcf file with snps.from.file function
motifbreakR vcf snps motif analysis
updated 7.6 years ago by ★ 6.8k • written 7.6 years ago by ▴ 840
3
votes
4
replies
2.1k
views
No annotation for single SNPs
variantannotation SNPs txdb.hsapiens.ucsc.hg19.knowngene ucsc
updated 8.6 years ago by ★ 6.8k • written 8.6 years ago by • 0
0
votes
1
reply
1.8k
views
Extract SNPs and INDELs
hsapiens snps indels
updated 10.2 years ago by 16k • written 10.2 years ago by • 0
0
votes
1
reply
2.2k
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Counting SNPs where ambiguity codes represent heterozygosity.
Biostrings SNPs alignment
updated 10.5 years ago by 16k • written 10.6 years ago by ▴ 30
0
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4
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2.4k
views
Marking and annotating several SNPs on Ideogram track by Gviz package.
gviz ideogram snps
updated 11.0 years ago by ★ 1.6k • written 11.0 years ago by • 0
4
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3
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2.8k
views
Overlap the snps
overlap snps granges iranges
updated 11.3 years ago by ★ 11k • written 11.3 years ago by ▴ 10
11 results • Page 1 of 1
Recent ...
Replies
Comment: Chip Seq Analysis of RNA Polymerase 2 by Tikaaaq2c • 0
Without proper scaling or an enrichment check , Pol 2 peaks can appear flat against the background. If the data remains noisy, you might w…
Comment: Changing multiple display parameters of a specific exon in GeneRegionTrack by Tikaaaq2c • 0
Organizing complex transcripts requires the same discipline as managing a digital library on a learning platform. Many researchers use a [S…
Comment: soGGi error by shepherl 4.3k
We have tried to contact the soGGi maintainer to have them update the package to the newer version of gglot2 but they have so far been unre…
Comment: using limma trend workflow in CAMERA by Gordon Smyth 53k
No, `trend.var=TRUE` and `trend=TRUE` are not needed in any voom pipeline, because the trend is already incorporated into the voom weights.
Comment: Questions about bacon QC and correction on EWAS results by Tikaaa2sahaaaq2c • 0
In the world of mobile games, the 88ef game download has gained traction for its performance driven design [free download][1], similar to …
Votes
Answer: DiffBind differential analysis
Answer: Limma-voom sample weights and impact on DEG numbers
C: Why limma, edgeR, and DESeq did not implement fold change moderation first?
Comment: using limma trend workflow in CAMERA
C: z-score with DESeq2?
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