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Showing :
snps
•
reset
1
vote
2
replies
3.5k
views
Any tool to calculate Fst on haploid data?
snps
VCF
updated 3.5 years ago by
Arafat
• 0 • written 8.7 years ago by
rkdonthu
▴ 10
0
votes
1
reply
926
views
Error running hierClust
hierClust
R
SNPs
clustering
updated 3.6 years ago by
James W. MacDonald
68k • written 3.6 years ago by
sekhwal
• 0
0
votes
0
replies
1.4k
views
How to extract genomic positions of SNPs using snp-sites or using any R package?
SNPs
6.6 years ago
pltbiotech_tkarthi
• 0
0
votes
0
replies
1.6k
views
vcf to venn diagram
snps
vcf
venn diagram
ggplot2
6.9 years ago
mictadlo
▴ 10
0
votes
6
replies
1.7k
views
Physical position to gene positions
bioconductor
molecular biology
snps
updated 7.0 years ago by
James W. MacDonald
68k • written 7.0 years ago by
jebreen20
• 0
2
votes
5
replies
3.3k
views
Error with R package motifbreakR while trying to read a vcf file with snps.from.file function
motifbreakR
vcf
snps
motif analysis
updated 7.4 years ago by
Valerie Obenchain
★ 6.8k • written 7.4 years ago by
svlachavas
▴ 840
3
votes
4
replies
2.0k
views
No annotation for single SNPs
variantannotation
SNPs
txdb.hsapiens.ucsc.hg19.knowngene
ucsc
updated 8.4 years ago by
Valerie Obenchain
★ 6.8k • written 8.4 years ago by
Lna
• 0
0
votes
1
reply
1.8k
views
Extract SNPs and INDELs
hsapiens
snps
indels
updated 9.9 years ago by
Hervé Pagès
16k • written 10.0 years ago by
kredens
• 0
0
votes
1
reply
2.0k
views
Counting SNPs where ambiguity codes represent heterozygosity.
Biostrings
SNPs
alignment
updated 10.3 years ago by
Hervé Pagès
16k • written 10.3 years ago by
ben.ward
▴ 30
0
votes
4
replies
2.3k
views
Marking and annotating several SNPs on Ideogram track by Gviz package.
gviz
ideogram
snps
updated 10.8 years ago by
florian.hahne@novartis.com
★ 1.6k • written 10.8 years ago by
vnyirongo
• 0
4
votes
3
replies
2.7k
views
Overlap the snps
overlap
snps
granges
iranges
updated 11.1 years ago by
Michael Lawrence
★ 11k • written 11.1 years ago by
anastasiya-terskih
▴ 10
11 results • Page
1 of 1
Recent ...
Replies
Comment: What R/Bioconductor tools would you recommend for the analysis of sncRNA, specif
by
Matthew Thornton
▴ 380
WOW! Thank you so much for the information. I will do this.
Comment: "Watched Tags" are being erased rather than updated
by
RalphSavage99
• 0
Thanks for sharing https://github.com/Bioconductor/support.bioconductor.org/issues/112
Answer: Add additional maintainer for MOFA2
by
shepherl
4.2k
These requests are best on the bioc-devel @ r-project.org or a request to maintainer @ bioconductor.org -- We would ideally need the curre…
Answer: After running samtools, the featureCounts command crashed.
by
Kevin Blighe
★ 4.0k
Hi Rui Tang, The "buffer overflow detected" error in featureCounts usually stems from a corrupted or malformed GTF file, often due to tr…
Answer: Problem with the TMB plot
by
Kevin Blighe
★ 4.0k
Hi, The linear TMB plot with no clustering suggests your variant calls may lack sample-specific discrimination, likely due to filtering ap…
Votes
Answer: What R/Bioconductor tools would you recommend for the analysis of sncRNA, specif
Using edgeR or DESeq2 to analyze allele-specific expression?
Answer: DESeq2 design for haplotype MPRA
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Failure to download resources (MeSHDb) from AnnotationHub
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