Bioconductor Snps

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3.5k

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snps VCF

updated 3.4 years ago by Arafat • 0 • written 8.7 years ago by rkdonthu ▴ 10

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912

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hierClust R SNPs clustering

updated 3.6 years ago by James W. MacDonald 68k • written 3.6 years ago by sekhwal • 0

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1.3k

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SNPs

6.6 years ago pltbiotech_tkarthi • 0

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1.6k

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snps vcf venn diagram ggplot2

6.8 years ago mictadlo ▴ 10

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1.6k

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bioconductor molecular biology snps

updated 6.9 years ago by James W. MacDonald 68k • written 6.9 years ago by jebreen20 • 0

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3.2k

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motifbreakR vcf snps motif analysis

updated 7.3 years ago by Valerie Obenchain ★ 6.8k • written 7.3 years ago by svlachavas ▴ 840

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1.9k

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variantannotation SNPs txdb.hsapiens.ucsc.hg19.knowngene ucsc

updated 8.3 years ago by Valerie Obenchain ★ 6.8k • written 8.3 years ago by Lna • 0

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1.8k

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hsapiens snps indels

updated 9.9 years ago by Hervé Pagès 16k • written 9.9 years ago by kredens • 0

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2.0k

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Biostrings SNPs alignment

updated 10.2 years ago by Hervé Pagès 16k • written 10.3 years ago by ben.ward ▴ 30

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2.3k

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gviz ideogram snps

updated 10.7 years ago by florian.hahne@novartis.com ★ 1.6k • written 10.7 years ago by vnyirongo • 0

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2.7k

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overlap snps granges iranges

updated 11.0 years ago by Michael Lawrence ★ 11k • written 11.0 years ago by anastasiya-terskih ▴ 10

11 results • Page 1 of 1

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Comment: Announcing GBCC 2025: The first-ever joint conference between Bioconductor and G by dzv20413 • 0

Wow, GBCC 2025 sounds amazing, can not wait to see the logo contest results! Also, I just played [Level Devil][1] and it is super addictive…

Comment: Memory error while running alignments by Erik Wright ▴ 150

How much memory is available on the computer? A distance matrix of 50k sequences requires at least 50k*50k/2 * 8 bytes = 10GB, assuming the…

Comment: NA values for DESeq2 p-values and adjusted p-values using large sample sizes by Gabriel • 0

Thank you very much for the reply. However, none of these three options seems to fit: 1) The genes for which NA appears do not have all 0 …

Comment: "organism" missing in BSgenome.Hsapiens.UCSC.hg38 slotNames by ubjw24 • 0

Thank you for your replies. I got the problem solved by installing mutSignature with this line: ``` devtools::install_github("dami82/mutS…

Comment: DESeq2 design for haplotype MPRA by Rita • 0

Thank you very much, I appreciate it!

Votes

Comment: Check removeBatchEffect effectiveness

Comment: Streamlining the computing time for MiloDE p-value correction in large dataset?

Answer: DESeq2 design for haplotype MPRA

A: Different logFC (log2foldchange) values for genes from limma-voom and other too

Comment: Check removeBatchEffect effectiveness

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