Bioconductor Snps

Showing : snps • reset

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3.5k

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snps VCF

updated 3.5 years ago by Arafat • 0 • written 8.7 years ago by rkdonthu ▴ 10

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926

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hierClust R SNPs clustering

updated 3.6 years ago by James W. MacDonald 68k • written 3.6 years ago by sekhwal • 0

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1.4k

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SNPs

6.6 years ago pltbiotech_tkarthi • 0

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1.6k

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snps vcf venn diagram ggplot2

6.9 years ago mictadlo ▴ 10

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1.7k

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bioconductor molecular biology snps

updated 7.0 years ago by James W. MacDonald 68k • written 7.0 years ago by jebreen20 • 0

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3.3k

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motifbreakR vcf snps motif analysis

updated 7.4 years ago by Valerie Obenchain ★ 6.8k • written 7.4 years ago by svlachavas ▴ 840

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2.0k

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variantannotation SNPs txdb.hsapiens.ucsc.hg19.knowngene ucsc

updated 8.4 years ago by Valerie Obenchain ★ 6.8k • written 8.4 years ago by Lna • 0

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1.8k

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hsapiens snps indels

updated 9.9 years ago by Hervé Pagès 16k • written 10.0 years ago by kredens • 0

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2.0k

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Biostrings SNPs alignment

updated 10.3 years ago by Hervé Pagès 16k • written 10.3 years ago by ben.ward ▴ 30

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2.3k

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gviz ideogram snps

updated 10.8 years ago by florian.hahne@novartis.com ★ 1.6k • written 10.8 years ago by vnyirongo • 0

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2.7k

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overlap snps granges iranges

updated 11.1 years ago by Michael Lawrence ★ 11k • written 11.1 years ago by anastasiya-terskih ▴ 10

11 results • Page 1 of 1

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Comment: What R/Bioconductor tools would you recommend for the analysis of sncRNA, specif by Matthew Thornton ▴ 380

WOW! Thank you so much for the information. I will do this.

Comment: "Watched Tags" are being erased rather than updated by RalphSavage99 • 0

Thanks for sharing https://github.com/Bioconductor/support.bioconductor.org/issues/112

Answer: Add additional maintainer for MOFA2 by shepherl 4.2k

These requests are best on the bioc-devel @ r-project.org or a request to maintainer @ bioconductor.org -- We would ideally need the curre…

Answer: After running samtools, the featureCounts command crashed. by Kevin Blighe ★ 4.0k

Hi Rui Tang, The "buffer overflow detected" error in featureCounts usually stems from a corrupted or malformed GTF file, often due to tr…

Answer: Problem with the TMB plot by Kevin Blighe ★ 4.0k

Hi, The linear TMB plot with no clustering suggests your variant calls may lack sample-specific discrimination, likely due to filtering ap…

Votes

Answer: What R/Bioconductor tools would you recommend for the analysis of sncRNA, specif

Using edgeR or DESeq2 to analyze allele-specific expression?

Answer: DESeq2 design for haplotype MPRA

Answer: Failure to download resources (MeSHDb) from AnnotationHub

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