Bioconductor Snps

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3.0k

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snps VCF

updated 2.5 years ago by Arafat • 0 • written 7.8 years ago by rkdonthu ▴ 10

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740

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hierClust R SNPs clustering

updated 2.7 years ago by James W. MacDonald 67k • written 2.7 years ago by sekhwal • 0

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1.1k

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SNPs

5.7 years ago pltbiotech_tkarthi • 0

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1.4k

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snps vcf venn diagram ggplot2

5.9 years ago mictadlo ▴ 10

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1.4k

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bioconductor molecular biology snps

updated 6.0 years ago by James W. MacDonald 67k • written 6.0 years ago by jebreen20 • 0

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2.8k

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motifbreakR vcf snps motif analysis

updated 6.4 years ago by Valerie Obenchain ★ 6.8k • written 6.4 years ago by svlachavas ▴ 830

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1.6k

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variantannotation SNPs txdb.hsapiens.ucsc.hg19.knowngene ucsc

updated 7.4 years ago by Valerie Obenchain ★ 6.8k • written 7.4 years ago by Lna • 0

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1.6k

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hsapiens snps indels

updated 9.0 years ago by Hervé Pagès 16k • written 9.0 years ago by kredens • 0

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1.7k

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Biostrings SNPs alignment

updated 9.3 years ago by Hervé Pagès 16k • written 9.4 years ago by ben.ward ▴ 30

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2.0k

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gviz ideogram snps

updated 9.8 years ago by florian.hahne@novartis.com ★ 1.6k • written 9.8 years ago by vnyirongo • 0

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2.4k

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overlap snps granges iranges

updated 10.1 years ago by Michael Lawrence ★ 11k • written 10.1 years ago by anastasiya-terskih ▴ 10

11 results • Page 1 of 1

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Answer: Deseq2 res Function by Michael Love 43k

> Does this mean the young and KO groups were numerators and denominators in the analysis, respectively? Read over the vignette and work…

Answer: ANOVA like approach of edgeR by Gordon Smyth 51k

You need to clarify whether interactions are present for the two factors in your study. In the two factors do not interact, then the code y…

Answer: Create Illmina bead summary data by Gordon Smyth 51k

GenomeStudio produces IDAT files that you can read using the `read.idat` function in limma. That is the recommended way to read GenomeStudi…

Comment: Help with RSEM counts: do I transpose matrix? by NB • 0

OK thank you.

Comment: Help with RSEM counts: do I transpose matrix? by James W. MacDonald 67k

You can ask here, but please read the `DESeq2` vignette first, which should answer most questions.

Votes

Answer: Deseq2 res Function

Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification

Answer: ANOVA like approach of edgeR

Comment: ANOVA like approach of edgeR

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