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Showing :
snps
•
reset
1
vote
2
replies
3.1k
views
Any tool to calculate Fst on haploid data?
snps
VCF
updated 2.8 years ago by
Arafat
• 0 • written 8.0 years ago by
rkdonthu
▴ 10
0
votes
1
reply
778
views
Error running hierClust
hierClust
R
SNPs
clustering
updated 2.9 years ago by
James W. MacDonald
68k • written 2.9 years ago by
sekhwal
• 0
0
votes
0
replies
1.2k
views
How to extract genomic positions of SNPs using snp-sites or using any R package?
SNPs
5.9 years ago
pltbiotech_tkarthi
• 0
0
votes
0
replies
1.4k
views
vcf to venn diagram
snps
vcf
venn diagram
ggplot2
6.1 years ago
mictadlo
▴ 10
0
votes
6
replies
1.5k
views
Physical position to gene positions
bioconductor
molecular biology
snps
updated 6.2 years ago by
James W. MacDonald
68k • written 6.2 years ago by
jebreen20
• 0
2
votes
5
replies
2.9k
views
Error with R package motifbreakR while trying to read a vcf file with snps.from.file function
motifbreakR
vcf
snps
motif analysis
updated 6.7 years ago by
Valerie Obenchain
★ 6.8k • written 6.7 years ago by
svlachavas
▴ 840
3
votes
4
replies
1.7k
views
No annotation for single SNPs
variantannotation
SNPs
txdb.hsapiens.ucsc.hg19.knowngene
ucsc
updated 7.6 years ago by
Valerie Obenchain
★ 6.8k • written 7.7 years ago by
Lna
• 0
0
votes
1
reply
1.6k
views
Extract SNPs and INDELs
hsapiens
snps
indels
updated 9.2 years ago by
Hervé Pagès
16k • written 9.2 years ago by
kredens
• 0
0
votes
1
reply
1.8k
views
Counting SNPs where ambiguity codes represent heterozygosity.
Biostrings
SNPs
alignment
updated 9.6 years ago by
Hervé Pagès
16k • written 9.6 years ago by
ben.ward
▴ 30
0
votes
4
replies
2.1k
views
Marking and annotating several SNPs on Ideogram track by Gviz package.
gviz
ideogram
snps
updated 10.1 years ago by
florian.hahne@novartis.com
★ 1.6k • written 10.1 years ago by
vnyirongo
• 0
4
votes
3
replies
2.5k
views
Overlap the snps
overlap
snps
granges
iranges
updated 10.4 years ago by
Michael Lawrence
★ 11k • written 10.4 years ago by
anastasiya-terskih
▴ 10
11 results • Page
1 of 1
Recent ...
Replies
Comment: Overcoming confounding in batch effect correction
by
ATpoint
★ 4.7k
biostars.org and the [bioinformatics reddit][1] are suitable and have much larger audience than this forum here. [1]: https://www.reddi…
Comment: Overcoming confounding in batch effect correction
by
bbao
▴ 10
Thank you! And apologies for posting here. Do you know which forum I should go to in the future for questions like these?
Comment: For some reason I can't update BiocManager to 3.20
by
shepherl
4.1k
interesting. it could be since this is not your installation that it was installed by an admin that you do not have access to perform this…
Comment: Overcoming confounding in batch effect correction
by
ATpoint
★ 4.7k
Hi, this is not related to Bioconductor directly. And no, you cannot correct anything because in your own batch you only have a single samp…
Comment: MEDIPS - error using MEDIPS.CpGenrich
by
sg
• 0
I have the same error when I use 22 chrs with the paramenters chr.select: Error in h(simpleError(msg, call)) : error in evaluating the …
Votes
Answer: Store Matrix in DataFrame Cell
Answer: enrichGOgradient color change
Comment: Overcoming confounding in batch effect correction
Overcoming confounding in batch effect correction
Answer: Standardization of rlog transformed counts before PCA
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James W. MacDonald
68k
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Hervé Pagès
16k
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shepherl
4.1k
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Gordon Smyth
52k
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ATpoint
★ 4.7k
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