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Showing :
snps
•
reset
1
vote
2
replies
2.6k
views
Any tool to calculate Fst on haploid data?
snps
VCF
updated 24 months ago by
Arafat
• 0 • written 7.2 years ago by
rkdonthu
▴ 10
2
votes
5
replies
2.5k
views
Error with R package motifbreakR while trying to read a vcf file with snps.from.file function
motifbreakR
vcf
snps
motif analysis
updated 5.9 years ago by
Valerie Obenchain
★ 6.8k • written 5.9 years ago by
svlachavas
▴ 830
4
votes
3
replies
2.1k
views
Overlap the snps
overlap
snps
granges
iranges
updated 9.6 years ago by
Michael Lawrence
★ 11k • written 9.6 years ago by
anastasiya-terskih
▴ 10
0
votes
4
replies
1.8k
views
Marking and annotating several SNPs on Ideogram track by Gviz package.
gviz
ideogram
snps
updated 9.3 years ago by
florian.hahne@novartis.com
★ 1.6k • written 9.3 years ago by
vnyirongo
• 0
0
votes
1
reply
1.5k
views
Counting SNPs where ambiguity codes represent heterozygosity.
Biostrings
SNPs
alignment
updated 8.8 years ago by
Hervé Pagès
16k • written 8.8 years ago by
ben.ward
▴ 30
0
votes
1
reply
1.4k
views
Extract SNPs and INDELs
hsapiens
snps
indels
updated 8.4 years ago by
Hervé Pagès
16k • written 8.4 years ago by
kredens
• 0
3
votes
4
replies
1.4k
views
No annotation for single SNPs
variantannotation
SNPs
txdb.hsapiens.ucsc.hg19.knowngene
ucsc
updated 6.9 years ago by
Valerie Obenchain
★ 6.8k • written 6.9 years ago by
Lna
• 0
0
votes
0
replies
1.2k
views
vcf to venn diagram
snps
vcf
venn diagram
ggplot2
5.3 years ago
mictadlo
▴ 10
0
votes
6
replies
1.2k
views
Physical position to gene positions
bioconductor
molecular biology
snps
updated 5.4 years ago by
James W. MacDonald
65k • written 5.4 years ago by
jebreen20
• 0
0
votes
0
replies
836
views
How to extract genomic positions of SNPs using snp-sites or using any R package?
SNPs
5.1 years ago
pltbiotech_tkarthi
• 0
0
votes
1
reply
600
views
Error running hierClust
hierClust
R
SNPs
clustering
updated 2.1 years ago by
James W. MacDonald
65k • written 2.1 years ago by
sekhwal
• 0
11 results • Page
1 of 1
Recent ...
Replies
Comment: Differences in differential analysis methods for RNA-Seq
by
ATpoint
★ 4.1k
> I am just re-processing due to being uncertain about how they used the edgeR analysis to reach gene level edgeR devs published something…
Comment: Differences in differential analysis methods for RNA-Seq
by
james.zhang20
• 0
Thanks for the explanations, it has helped clarify some things. Unfortunately, I am working from an early access public dataset (https://do…
Comment: Deseq2 and Normalization of RNA sequencing data
by
ATpoint
★ 4.1k
There is no expectation of normality that is realistic in terms of expression level. Levels are widely different between genes, and counts …
Comment: Differences in differential analysis methods for RNA-Seq
by
ATpoint
★ 4.1k
MAGeCK is a command line tool that is easy to use. I recommend you use it because a) the logFCs from DESeq2 and MAGeCK will be very similar…
Comment: Get genomic coordinates of CpGs sites (chromosomes, genomic position)
by
Yveto
• 0
Thank for your response. It is Illumina 450 K. I use this code ```{r } library(IlluminaHumanMethylation450kanno.ilmn12.hg19) annotat…
Votes
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
SPIA plotP giving error
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Rory Stark
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tangming2005
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