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limma roast statistics source code gene set testing

7.4 years ago Andrea Carenzo • 0

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r source code error

7.6 years ago shreyasarkar0 • 0

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source code isa.iterate()

updated 8.6 years ago by Haiying.Kong ▴ 110 • written 8.6 years ago by zhang.jianhai ▴ 10

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vsn r language C++ source code

updated 8.9 years ago by Lluís Revilla Sancho ▴ 760 • written 8.9 years ago by core_wzw • 0

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source code xcms m/z groupval xcmsSet

updated 9.2 years ago by Johannes Rainer ★ 2.1k • written 9.2 years ago by juniormbarga • 0

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reproducibility archive source code

updated 10.3 years ago by Dan Tenenbaum ★ 8.2k • written 10.3 years ago by brucbruc • 0

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medips bioconductor error source code

11.2 years ago malbert1 • 0

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Comment: chemmineOB install help by Jeremy • 0

I could install ChemmineOB on my MacBook Pro M1 Max using this procedure **1. Install open-babel and eigen using homebrew and create a cus…

Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by Gordon Smyth 53k

The design matrix that I described above is completely general. I imagine that it would be possible to use the same approach to generate fu…

Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by chp265 • 0

Cool, glad to hear I wasn't missing some functionality in DESeq2. I don't know that much about the differences between DESeq2 vs edgeR; my …

Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by Michael Love 43k

Yes, so for one thing, note that Gordon has provided code for doing what you are asking in edgeR, which you can go ahead and use. You aske…

Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by chp265 • 0

I don't think DESeq2 has the ability to do multi-contrast comparisons, at least based on what I can understand of the manual; I can pick mu…

Votes

A: DESeq2: Is it possible to convert read counts to expression values via TPM and r

A: Filtering read counts matrix: how to deal with duplicated gene symbols, differen

Comment: limpa analysis advice

Answer: When to use edgeR or limma

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