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systemPipeR
•
reset
3
votes
2
replies
997
views
How to export Slurm to my PATH in Ubuntu 20.04
systemPipeRdata
systempipeR
2.2 years ago
appropiate
• 0
0
votes
0
replies
509
views
Subdirectories created by systemPipeR
systemPipeRdata
systemPipeR
2.2 years ago
appropiate
• 0
0
votes
1
reply
775
views
how to analysis chip-seq data
systemPipeR
updated 2.4 years ago by
dcassol
▴ 100 • written 2.4 years ago by
Bioinformatics
▴ 30
2
votes
2
replies
3.0k
views
DiffBind installation fails: Error: package ‘BiocGenerics’ 0.34.0 is loaded, but >= 0.36.0 is required by ‘IRanges’
systemPipeR
Bioconductor
DiffBind
BiocGenerics
updated 3.3 years ago by
Martin Morgan
25k • written 3.3 years ago by
tina
• 0
0
votes
0
replies
691
views
Finding longest non overlapping open reading frames
predORF
systemPipeR
ORF
prediction
5.1 years ago
Mr.RB
▴ 20
14
votes
10
replies
3.7k
views
Error when trying to preprocessReads() : "Error: logical subscript contains NAs"
systempiper
5.5 years ago
Deleted
▴ 70
0
votes
2
replies
1.2k
views
runCommandline error - bash: module: command not found
runCommandline
systemPipeR
bash
5.6 years ago
rj.innet
• 0
0
votes
2
replies
1.2k
views
Problem running (loading) systemPipeR package after downloading
systemPipeR
rnaseq
5.7 years ago
rj.innet
• 0
0
votes
2
replies
684
views
systemARGS not found
systempiper
5.8 years ago
kimberly.dickson
• 0
0
votes
3
replies
1.7k
views
error: NA counts not permitted
systempiper
edger
rna-seq
updated 6.1 years ago by
Aaron Lun
★ 28k • written 6.1 years ago by
clarisbaby
• 0
0
votes
1
reply
1.1k
views
What R version does systemPipeR runs
systempiper
R
batchjobs
updated 6.7 years ago by
Thomas Girke
★ 1.7k • written 6.7 years ago by
tarun2
• 0
0
votes
2
replies
1.2k
views
Why all of the logFC are NA in my edgeDF2
R
edger
systemPipeR
7.2 years ago
xuertowong
• 0
2
votes
3
replies
2.1k
views
SystemPipeR: alignments with ambiguous pairing were dumped.
R
rnaseq
tophat
summarizeoverlaps
systempiper
updated 7.5 years ago by
Thomas Girke
★ 1.7k • written 7.5 years ago by
abass.conteh
• 0
1
vote
2
replies
2.0k
views
Problem with systemPipeR package: run_edgeR or run_DESeq2 functions don't work
systempiper
run_edgeR
updated 7.6 years ago by
Thomas Girke
★ 1.7k • written 7.6 years ago by
alexandr.gopanenko
▴ 50
0
votes
7
replies
3.7k
views
DESeq2 LRT Error: less than one degree of freedom, perhaps full and reduced models are not in the correct order
deseq2
systempiper
Tutorial
7.9 years ago
musa
▴ 10
0
votes
4
replies
1.4k
views
SystemPipeR GO term enrichment analysis - filterDEG
systempiper
go term
8.0 years ago
A Gossner
▴ 50
0
votes
2
replies
1.7k
views
error when using seeFastqPlot
systempiper
seeFastqPlot
software error
ggplot2
geom_histogram
updated 8.3 years ago by
Thomas Girke
★ 1.7k • written 8.3 years ago by
setarosd
• 0
0
votes
4
replies
1.6k
views
systemPipeR with DESeq2
deseq2
systemPipeR
9.6 years ago
Ugo Borello
▴ 340
18 results • Page
1 of 1
Recent ...
Replies
Comment: Ensembl plants at annotationHub?
by
Daniele
• 0
Dear Johannes, Would it be possible to create the EnsDb for Triticum aestivum (IWGSC)? Thank you very much, Daniele
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
by
BioinfGuru
▴ 30
Figured it out with ?eigencorplot, thanks Michael. I was trying to pass 10 PCs when I only had 8, and I was including metadata columns that…
Answer: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set
by
makala
• 0
Thanks a lot!
Comment: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set
by
Erik Wright
▴ 150
Thanks for notifying us of this broken link. It should be fixed on the Downloads page now. [1] [1]: http://www2.decipher.codes/Classificat…
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
by
Matthew Thornton
▴ 360
So it turns out that if the count and the size are the same in 'GOstats", the odds ratio is 'inf'. These are causing the issue. Thank you!!
Votes
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
Comment: Can DESeq2 rlog normalized matrix reflects time course result directly?
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Guido Hooiveld
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