Bioconductor SystemPipeR

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3.7k

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systempiper

5.4 years ago Deleted ▴ 70

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3.7k

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deseq2 systempiper Tutorial

7.8 years ago musa ▴ 10

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1.5k

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deseq2 systemPipeR

9.5 years ago Ugo Borello ▴ 340

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1.4k

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systempiper go term

7.9 years ago A Gossner ▴ 50

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2.1k

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R rnaseq tophat summarizeoverlaps systempiper

updated 7.5 years ago by Thomas Girke ★ 1.7k • written 7.5 years ago by abass.conteh • 0

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1.7k

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systempiper edger rna-seq

updated 6.1 years ago by Aaron Lun ★ 28k • written 6.1 years ago by clarisbaby • 0

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runCommandline systemPipeR bash

5.6 years ago rj.innet • 0

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972

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systemPipeRdata systempipeR

2.1 years ago appropiate • 0

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1.6k

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systempiper seeFastqPlot software error ggplot2 geom_histogram

updated 8.3 years ago by Thomas Girke ★ 1.7k • written 8.3 years ago by setarosd • 0

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systempiper run_edgeR

updated 7.6 years ago by Thomas Girke ★ 1.7k • written 7.6 years ago by alexandr.gopanenko ▴ 50

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1.2k

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R edger systemPipeR

7.1 years ago xuertowong • 0

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671

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systempiper

5.7 years ago kimberly.dickson • 0

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systemPipeR rnaseq

5.6 years ago rj.innet • 0

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3.0k

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systemPipeR Bioconductor DiffBind BiocGenerics

updated 3.2 years ago by Martin Morgan 25k • written 3.2 years ago by tina • 0

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systempiper R batchjobs

updated 6.6 years ago by Thomas Girke ★ 1.7k • written 6.6 years ago by tarun2 • 0

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753

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systemPipeR

updated 2.3 years ago by dcassol ▴ 100 • written 2.3 years ago by Bioinformatics ▴ 30

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502

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systemPipeRdata systemPipeR

2.1 years ago appropiate • 0

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677

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predORF systemPipeR ORF prediction

5.0 years ago Mr.RB ▴ 20

18 results • Page 1 of 1

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Answer: Dominance Index for Shotgun Metagenomics Data by Leo Lahti ▴ 40

1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…

Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0

Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …

Answer: PCA plot suggestions by Michael Love 41k

For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10

Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…

Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k

Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…

Votes

Answer: Dominance Index for Shotgun Metagenomics Data

Answer: Math expression in shapeCustom legend in EnhancedVolcano

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length

Comment: Deseq2. decontXcounts not integers. Useful alternative?

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)

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