Bioconductor SystempipeR

Showing : systempipeR • reset

votes

replies

3.7k

views

systempiper

5.4 years ago Deleted ▴ 70

votes

replies

3.7k

views

deseq2 systempiper Tutorial

7.9 years ago musa ▴ 10

votes

replies

1.5k

views

deseq2 systemPipeR

9.5 years ago Ugo Borello ▴ 340

votes

replies

1.4k

views

systempiper go term

7.9 years ago A Gossner ▴ 50

votes

replies

2.1k

views

R rnaseq tophat summarizeoverlaps systempiper

updated 7.5 years ago by Thomas Girke ★ 1.7k • written 7.5 years ago by abass.conteh • 0

votes

replies

1.7k

views

systempiper edger rna-seq

updated 6.1 years ago by Aaron Lun ★ 28k • written 6.1 years ago by clarisbaby • 0

votes

replies

1.2k

views

runCommandline systemPipeR bash

5.6 years ago rj.innet • 0

votes

replies

978

views

systemPipeRdata systempipeR

2.1 years ago appropiate • 0

votes

replies

1.6k

views

systempiper seeFastqPlot software error ggplot2 geom_histogram

updated 8.3 years ago by Thomas Girke ★ 1.7k • written 8.3 years ago by setarosd • 0

vote

replies

2.0k

views

systempiper run_edgeR

updated 7.6 years ago by Thomas Girke ★ 1.7k • written 7.6 years ago by alexandr.gopanenko ▴ 50

votes

replies

1.2k

views

R edger systemPipeR

7.2 years ago xuertowong • 0

votes

replies

674

views

systempiper

5.7 years ago kimberly.dickson • 0

votes

replies

1.2k

views

systemPipeR rnaseq

5.7 years ago rj.innet • 0

votes

replies

3.0k

views

systemPipeR Bioconductor DiffBind BiocGenerics

updated 3.3 years ago by Martin Morgan 25k • written 3.3 years ago by tina • 0

votes

1.1k

views

systempiper R batchjobs

updated 6.6 years ago by Thomas Girke ★ 1.7k • written 6.6 years ago by tarun2 • 0

votes

763

views

systemPipeR

updated 2.4 years ago by dcassol ▴ 100 • written 2.4 years ago by Bioinformatics ▴ 30

votes

replies

504

views

systemPipeRdata systemPipeR

2.2 years ago appropiate • 0

votes

replies

683

views

predORF systemPipeR ORF prediction

5.1 years ago Mr.RB ▴ 20

18 results • Page 1 of 1

Recent ...

Replies

Answer: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0

Hi Michael, I think there is something wrong with the generation of nullranges. I was working with small RNA and methylation overlaps. …

Answer: Once again a "Model matrix not full rank" by swbarnes2 ★ 1.3k

Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…

Answer: limma Intercept vs No-intercept models completely changing DMR results? by Gordon Smyth 50k

I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …

Answer: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k

It is true that goseq isn't available for Bioc 3.19 (as at 4 May 2024). In the meantime, you could consider using the goana() and kegga() …

Answer: limma Intercept vs No-intercept models completely changing DMR results? by James W. MacDonald 65k

This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…

Votes

Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-

Answer: limma Intercept vs No-intercept models completely changing DMR results?

Answer: CombineArrays for EPIC and EPIC V2

Answer: Too many significant genes when integrating gtex and tcga

Comment: Too many significant genes when integrating gtex and tcga

Awards • All