Bioconductor Tfbstools

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871

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TFBSTools R forloop

updated 3.1 years ago by onlineclasshelpnow • 0 • written 3.1 years ago by HELEN • 0

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774

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TFBSTools FASTA RStudio

3.1 years ago HELEN • 0

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987

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TFBSTools DNASeqData readFASTA DNA RStudio

updated 3.1 years ago by James W. MacDonald 67k • written 3.1 years ago by HELEN • 0

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1.1k

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error TFBSTools R

3.1 years ago HELEN • 0

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766

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TFBSTools RStudio R

3.2 years ago HELEN • 0

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2.6k

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pwm tfbstools jaspar

updated 7.2 years ago by Ge Tan ▴ 20 • written 7.2 years ago by chrisclarkson100 ▴ 50

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2.2k

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TFBSTools looping PFMatrixList PFMatrix bioconductor

7.6 years ago nathan.lawlor03 • 0

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1.2k

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bioconductor tfbstools

updated 8.2 years ago by Ge Tan ▴ 20 • written 8.2 years ago by laurabuggiotti • 0

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1.5k

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tfbstools jaspar

updated 9.2 years ago by Ge Tan ▴ 20 • written 9.2 years ago by JasonLouisStein • 0

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1.5k

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tfbstools

updated 9.6 years ago by Ge Tan ▴ 20 • written 9.7 years ago by franceskrussell • 0

10 results • Page 1 of 1

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Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k

For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…

Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by xiaofeiwang198266 • 0

Thanks for your reply!

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Hervé Pagès 16k

> I have requested gDNAx developers for a feature request to turn off seqlevelsStyle(txdb) Yes, that's the right course of action. `seqlev…

Comment: ISO a solution to rank-order introns by transcript by mat149 ▴ 80

Hey, In revisiting this question, the following code works for the '+' strand. I am having issues with demarcating intron rank by transcri…

Comment: Normalizing batch effects using technical replicates for DGE analysis between tw by Gordon Smyth 52k

Since the intra-block correlation is negative, it would be best to remove `block` from the model. My experience with genetically identical…

Votes

C: edgeR and lack of counts ID on CPM matrix

A: DESeq2 Following RSEM

A: importing RSEM data into DESeq2

A: Expected counts from RSEM in DESeq2

A: Using RSEM reads for DESeq2

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