Showing : transcription • reset
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Bioconductor 2.10 is released
Transcription Sequencing Microarray Annotation Normalization Visualization Network Bayesian
13.6 years ago Dan Tenenbaum ★ 8.2k
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5
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2.3k
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Help with promoter analysis
Transcription convert biomaRt Transcription convert biomaRt
13.7 years ago Davy ▴ 20
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2
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7.1k
views
gplots Heatmap
SNP Transcription Sequencing RNASeq miRNA Microarray Annotation Normalization GO Cancer
updated 13.7 years ago by ★ 13k • written 13.7 years ago by ▴ 10
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Open Position :: Postdoc in systems genetics in Cambridge
Transcription Genetics Visualization Network Cancer Breast Lung Transcription Genetics
13.7 years ago Florian Markowetz ▴ 20
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1.0k
views
about transcription factor binding site database
Transcription biomaRt Transcription biomaRt
updated 13.9 years ago by ★ 13k • written 13.9 years ago by ▴ 70
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2.0k
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PhD position available in Innsbruck, Austria
Transcription Microarray Cancer Leukemia Transcription Microarray Cancer Leukemia
14.0 years ago Johannes Rainer ▴ 80
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1.0k
views
ChIPpeakAnno, makeVennDiagram
Transcription ChIPpeakAnno Transcription ChIPpeakAnno
14.0 years ago Julie Zhu ★ 4.3k
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Bioconductor 2.9 is released
Transcription Sequencing miRNA qPCR Proteomics Annotation Normalization Visualization cdf
14.0 years ago Dan Tenenbaum ★ 8.2k
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1.5k
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[Job] Functional genomic analysis of cancer/RNAi screening
Transcription Sequencing Genetics Pathways Cancer Prostate Transcription Sequencing Cancer
14.1 years ago Sean Davis 21k
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ChIPpeakAnno - for genes with multiple isoforms
Transcription Annotation annotate ChIPpeakAnno Transcription Annotation annotate
14.1 years ago Julie Zhu ★ 4.3k
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12
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3.1k
views
more stupid *Ranges questions...
Transcription ChIPpeakAnno GenomicRanges Transcription ChIPpeakAnno GenomicRanges
updated 14.1 years ago by ★ 11k • written 14.1 years ago by ★ 4.2k
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0
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1.4k
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New version of rGADEM - ChIP-Seq, de novo motif discovery
Transcription rGADEM Transcription rGADEM
14.2 years ago Charles Joly ▴ 10
1
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biomart Ensembl Regulatory Build
SNP Transcription biomaRt SNP Transcription biomaRt
14.5 years ago Fabrice Tourre ▴ 970
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1.5k
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Using ChIPpeakAnno on a non-mainstream organism
Transcription Annotation GO AnnotationData Organism BSgenome biomaRt BSgenome ChIPpeakAnno
14.5 years ago Julie Zhu ★ 4.3k
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GO with R and Bioconductor
Transcription Annotation GO GOstats biomaRt topGO GSEABase goseq Transcription Annotation
14.7 years ago Duke ▴ 210
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5
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2.8k
views
GO with R and Bioconductor
Transcription GO GOstats biomaRt topGO goseq Transcription GO GOstats biomaRt topGO
updated 14.7 years ago by 6.7k • written 14.7 years ago by ▴ 210
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4
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2.8k
views
PWMmatch: position weight matrix or position frequency matrix?
Transcription Transcription
updated 14.7 years ago by 16k • written 14.7 years ago by ▴ 10
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2
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1.4k
views
How Does one subset a XStringView or PDict object?
Transcription BSgenome Biostrings BSgenome Transcription BSgenome Biostrings BSgenome
updated 14.7 years ago by 25k • written 14.7 years ago by ▴ 410
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1.7k
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Bioconductor 2.7 is released
BiocViews aCGH Transcription RNASeq miRNA Microarray Normalization Network Bayesian aCGH
15.0 years ago Martin Morgan 25k
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views
How to do GO enrichment analysis with GOstats while the gene set with no p values of gene difference expression
Transcription PROcess GOstats cycle Transcription PROcess GOstats cycle
15.3 years ago zhidong yuan ▴ 10
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1
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2.3k
views
Question on Hypergeometric P value generated from makeVennDiagram in ChIPpeakAnno
Transcription GO ChIPpeakAnno Transcription GO ChIPpeakAnno
updated 15.3 years ago by ★ 4.3k • written 15.3 years ago by ▴ 410
0
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2
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Querying/manipulating JASPAR data
Transcription Cancer Transcription Cancer
updated 15.4 years ago by ★ 1.7k • written 15.4 years ago by ★ 13k
0
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1.1k
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ChIPpeakAnno Paper - Example Dataset not found
Transcription ChIPSeq Annotation chipseq genomes Transcription ChIPSeq Annotation chipseq
15.4 years ago Julie Zhu ★ 4.3k
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2
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1.4k
views
simple functional analysis of gene lists
Transcription GO convert Transcription GO convert
updated 15.6 years ago by ▴ 190 • written 15.6 years ago by ▴ 60
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2
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1.7k
views
chip-seq data analysis
Transcription ChIPSeq Alignment chipseq Transcription ChIPSeq Alignment chipseq
updated 15.7 years ago by 21k • written 15.7 years ago by ▴ 60
0
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3
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1.4k
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ChIPpeakAnno
Transcription ChIPpeakAnno Transcription ChIPpeakAnno
15.8 years ago • updated 15.7 years ago Julie Zhu ★ 4.3k
0
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1
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1.3k
views
concurrent R-release & R-devel versions -- bioc also? [was Re: from TF DNA binding motif to downstream genes?]
Transcription GO celegans BSgenome Biostrings BSgenome IRanges Transcription GO celegans
updated 15.7 years ago by 21k • written 15.7 years ago by ★ 1.1k
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5
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1.9k
views
from TF DNA binding motif to downstream genes?
Transcription Biostrings Transcription Biostrings
updated 15.8 years ago by ★ 1.6k • written 15.8 years ago by ★ 1.1k
0
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1
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1.2k
views
TSS Regions
Transcription IRanges Transcription IRanges
updated 15.9 years ago by ★ 4.3k • written 15.9 years ago by ▴ 130
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Limma- deleting control probes from differential expression analysis
Transcription ASSIGN Transcription ASSIGN
15.9 years ago Neel Aluru ▴ 460
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2
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1.8k
views
exon and transcription start site locations
Transcription GO Transcription GO
updated 15.9 years ago by ▴ 620 • written 15.9 years ago by ▴ 180
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1
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1.5k
views
Help with Oligo Package: Extracting and Graphing
Transcription Normalization Yeast probe affy graph tilingArray oligo pdInfoBuilder Starr
updated 16.0 years ago by ▴ 430 • written 16.0 years ago by ▴ 410
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1
reply
1.4k
views
question about ontoCompare() performance change
Transcription GO hgu133a goTools Transcription GO hgu133a goTools
updated 16.0 years ago by ★ 7.4k • written 16.0 years ago by ▴ 50
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views
General Transcription USD 0.42
Transcription Transcription
16.1 years ago prakashpatodia@cabbagetreesolutions.com ▴ 10
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3
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1.8k
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R: R: How can I trace back transcription target genes from the miRNAs file downloadable from miRbase ?
Transcription miRNA Cancer Homo sapiens biomaRt microRNA Transcription miRNA Cancer
16.1 years ago mauede@alice.it ▴ 870
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3
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2.0k
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R: How can I trace back transcription target genes from the miRNAs file downloadable from miRbase ?
Transcription miRNA Homo sapiens biomaRt Transcription miRNA Homo sapiens biomaRt
updated 16.1 years ago by ▴ 580 • written 16.1 years ago by ▴ 870
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1
reply
768
views
How can I trace back transcription target genes from the miRNAs file downloadable from miRbase ?
Transcription miRNA Transcription miRNA
updated 16.1 years ago by 21k • written 16.1 years ago by ▴ 870
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Job advertisement
Transcription Sequencing Microarray Normalization Pathways PROcess Transcription Sequencing
16.1 years ago Alexandre Kuhn ▴ 60
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2
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1.5k
views
how to use writeFASTA in modality "append"
Transcription miRNA Biostrings Transcription miRNA Biostrings
updated 16.3 years ago by 16k • written 16.3 years ago by ▴ 870
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1
reply
1.4k
views
R: how to use writeFASTA in modality "append"
Transcription miRNA Biostrings Transcription miRNA Biostrings
updated 16.3 years ago by ★ 13k • written 16.3 years ago by ▴ 870
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1
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1.5k
views
question about ontoCompare() performance change
Transcription GO hgu133a goTools Transcription GO hgu133a goTools
updated 16.4 years ago by ▴ 60 • written 16.4 years ago by ▴ 50
0
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2
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2.7k
views
PWM matching using matchPWM in Biostrings
Transcription BSgenome Biostrings BSgenome Transcription BSgenome Biostrings BSgenome
updated 16.5 years ago by ★ 1.6k • written 16.5 years ago by ▴ 10
0
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1
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1.3k
views
Finding transcription factors controlling hk1 gene In timecourse experiment
Transcription TimeCourse affy timecourse Transcription TimeCourse affy timecourse
updated 16.5 years ago by ▴ 110 • written 16.5 years ago by ▴ 10
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interaction analysis
Transcription Microarray Network qpgraph Transcription Microarray Network qpgraph
16.7 years ago Robert Castelo ★ 3.4k
0
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0
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1.7k
views
GSEA to discover co-regulated genes
Transcription Annotation Pathways Infrastructure probe convert GSEABase Transcription
16.8 years ago Paul Geeleher ★ 1.3k
0
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1
reply
1.2k
views
GSEA to discover co-regulated genes
Transcription Pathways Transcription Pathways
updated 16.8 years ago by 6.7k • written 16.8 years ago by ★ 1.3k
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0
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903
views
synergy / interaction analysis between gene transcript & correlation / what package to do this ?
Transcription Transcription
16.8 years ago Philippe Guardiola ▴ 10
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0
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1.2k
views
interaction analysis
Transcription Transcription
16.8 years ago Phguardiol@aol.com ▴ 720
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votes
2
replies
3.2k
views
How to retrieve 'conservation score' sequence?
Transcription biomaRt Transcription biomaRt
updated 16.9 years ago by ▴ 620 • written 16.9 years ago by ★ 4.1k
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1
reply
1.2k
views
TilingArray Normalization
Transcription Normalization probe tilingArray Transcription Normalization probe tilingArray
updated 16.9 years ago by ★ 13k • written 16.9 years ago by ▴ 90
113 results • Page 2 of 3
Recent ...
Replies
Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k
I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112
Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k
we can investigate this issue. thank you for bringing it to our attention
Comment: deseq2 filter the low counts by Michael Love 43k
> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…
Comment: deseq2 filter the low counts by empty_mt • 0
Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …
Comment: deseq2 filter the low counts by Michael Love 43k
Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering
Votes
Bioconductor 3.22 Released!
Comment: "Watched Tags" are being erased rather than updated
Comment: deseq2 filter the low counts
Answer: DESeq2 interactions
Answer: Important: Bioconductor Release 3.22 Delayed
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