Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
transcripts
•
reset
1
vote
4
replies
1.0k
views
Simple UCSC to transcript annotation
annotation
ucsc
tdx
transcripts
6.8 years ago
AntonS
• 0
1
vote
4
replies
1.4k
views
comparing transcripts expression between conditions
salmon
transcripts
significance
counts
7.8 years ago
Assa Yeroslaviz
★ 1.5k
3
votes
7
replies
3.8k
views
Transcript level differential expression analysis
deseq2
deseqdataset
transcripts
updated 7.1 years ago by
Michael Love
41k • written 7.1 years ago by
tarun2
• 0
2
votes
7
replies
2.7k
views
HTA 2.0 and Transcript level analysis
hta2.0
transcripts
6.7 years ago
giroudpaul
▴ 40
1
vote
1
reply
1.2k
views
Ensembl transcripts returned by getBM not matching the biomart website
ensembl
transcripts
getbm
biomart
6.3 years ago
hihi.joshi
• 0
2
votes
1
reply
1.5k
views
Transcript biotypes for ncRNA in GRCh37 using biomaRt?
grch37
transcripts
biotype
biomaRt
ncrna
updated 5.7 years ago by
James W. MacDonald
65k • written 5.7 years ago by
sergio.martinezcuesta
▴ 10
1
vote
2
replies
1.4k
views
DEXSeq transcripts per condition
DEXSeq
transcripts
isoforms
updated 9.0 years ago by
Alejandro Reyes
★ 1.9k • written 9.0 years ago by
peter_venhuizen
• 0
0
votes
5
replies
1.9k
views
Help for Affymetrix HTA 2.0 [transcript (gene) version] annotation
hta2.0
annotation
transcripts
updated 5.6 years ago by
svlachavas
▴ 830 • written 5.6 years ago by
Biomed
• 0
8 results • Page
1 of 1
Recent ...
Replies
Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
James W. MacDonald
65k
This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…
Comment: CombineArrays for EPIC and EPIC V2
by
Kim
• 0
Thank you Tim, this is a great help in getting me started!
Comment: Too many significant genes when integrating gtex and tcga
by
Michael Love
41k
Yes, this was one of the aspects we highlighted in the 2014 paper, and it's also in the workflow. Check these places first. Also take a st…
Answer: Too many significant genes when integrating gtex and tcga
by
James W. MacDonald
65k
See `?results`, in particular the lfcThreshold argument.
Comment: Once again a "Model matrix not full rank"
by
James W. MacDonald
65k
You already ran a temporal assay. Now you can compare each time point to the baseline. The interaction term is only applicable if you have…
Votes
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
A: Print Differentially Expressed Exons From Dexseq Results
stuck on unimplemented type 'list' in 'EncodeElement'
Awards
• All
Popular Question
to
Gordon Smyth
50k
Popular Question
to
Zainab
• 0
Popular Question
to
Theo
▴ 10
Popular Question
to
gene_bioconductor
▴ 10
Popular Question
to
rohitsatyam102
▴ 20
Locations
• All
United States,
11 minutes ago
France,
12 minutes ago
Sweden,
15 minutes ago
WEHI, Melbourne, Australia,
17 minutes ago
United States,
22 minutes ago
Traffic: 640 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6