Bioconductor Variantfiltering

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VariantAnnotation VariantFiltering

18 months ago Bogdan ▴ 670

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VariantFiltering

updated 21 months ago by Robert Castelo ★ 3.4k • written 21 months ago by Andrew Beggs ▴ 90

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RNAseq123 VariantFiltering Alignment VariantAnnotation

updated 2.4 years ago by James W. MacDonald 68k • written 2.4 years ago by Mohamed ▴ 30

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bioconductor variantfiltering

7.6 years ago Claus.Hultschig • 0

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variantannotation variantfiltering

updated 8.0 years ago by Michael Lawrence ★ 11k • written 8.0 years ago by Bogdan ▴ 670

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VariantFiltering

9.7 years ago claire.simpson • 0

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sequencing transcription variantfiltering annotation News

9.8 years ago Matthew Ritchie ▴ 1000

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variantfiltering phastcons

updated 9.9 years ago by Robert Castelo ★ 3.4k • written 9.9 years ago by Stefanie Tauber ▴ 40

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1.9k

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VariantFiltering VariantFiltering

10.8 years ago Robert Castelo ★ 3.4k

9 results • Page 1 of 1

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Comment: DiffBind custom normalization factor by Abbie • 0

Hello! Thanks so much for adding dba.normalize and all the documentation in the manual! I'm hoping I can ask a follow-up question here. I…

Answer: CpGs with genomic positions greater than the chromosome size in EPICv2? by James W. MacDonald 68k

All of the annotation packages provided by Bioconductor are simply repackaging of existing data from one or more sources. In this case, the…

Comment: Using TPM from tximport of Salmon output for singscore by Kent • 0

Thank you for the suggestions Michael. Would you say that after filtering out the low count genes, `rlog(counts, blind = T)` is doing the s…

Comment: Using TPM from tximport of Salmon output for singscore by Michael Love 43k

For clustering generally we recommend `vst()` see the workflow for example. For working with individual samples, I can see how a scaling/t…

Comment: DESeq2 model - How to test case/control time course model when taking account wi by Michael Love 43k

I'd recommend working with a local statistician or someone familiar with linear models in R. I have to reserve my time on the support site …

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clusterProfiler-GO enrichment Error

A: Machine learning in R book

Data preparation and Machine learning on time course RNAseq data

Answer: Use of org.Rn.eg.db with GRCr8 reference genome

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Popular Question to Dario Strbenac ★ 1.6k