Bioconductor Variantfiltering

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VariantAnnotation VariantFiltering

2.2 years ago Bogdan ▴ 670

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738

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VariantFiltering

updated 2.5 years ago by Robert Castelo ★ 3.4k • written 2.5 years ago by Andrew Beggs ▴ 90

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2.9k

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RNAseq123 VariantFiltering Alignment VariantAnnotation

updated 3.1 years ago by James W. MacDonald 68k • written 3.1 years ago by Mohamed ▴ 30

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bioconductor variantfiltering

8.3 years ago Claus.Hultschig • 0

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variantannotation variantfiltering

updated 8.7 years ago by Michael Lawrence ★ 11k • written 8.7 years ago by Bogdan ▴ 670

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VariantFiltering

10.4 years ago claire.simpson • 0

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sequencing transcription variantfiltering annotation News

10.5 years ago Matthew Ritchie ▴ 1000

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variantfiltering phastcons

updated 10.6 years ago by Robert Castelo ★ 3.4k • written 10.7 years ago by Stefanie Tauber ▴ 40

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VariantFiltering VariantFiltering

11.6 years ago Robert Castelo ★ 3.4k

9 results • Page 1 of 1

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Comment: Bioinformatician at the Lausanne University Hospital by eja.ger.m • 0

For individuals looking to improve communication and collaboration in demanding medical or research environments like the Genetic Medicine …

Answer: NUPOP usage by shepherl 4.2k

You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…

Comment: How can I correctly use phyloseq with Docker? by fnfgame • 0

In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …

Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150

Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?

Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k

BTW, I tested with no issue on MacOS ARM on our previous github issue.

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C: DESeq2 Following RSEM

Upcoming Ensembl API and data access changes - new blog post available

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

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Popular Question to Lluís Revilla Sancho ▴ 760

Popular Question to James W. MacDonald 68k