Bioconductor Variantfiltering

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VariantAnnotation VariantFiltering

23 months ago Bogdan ▴ 670

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703

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VariantFiltering

updated 2.2 years ago by Robert Castelo ★ 3.4k • written 2.2 years ago by Andrew Beggs ▴ 90

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RNAseq123 VariantFiltering Alignment VariantAnnotation

updated 2.8 years ago by James W. MacDonald 68k • written 2.8 years ago by Mohamed ▴ 30

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bioconductor variantfiltering

8.0 years ago Claus.Hultschig • 0

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variantannotation variantfiltering

updated 8.5 years ago by Michael Lawrence ★ 11k • written 8.5 years ago by Bogdan ▴ 670

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VariantFiltering

10.1 years ago claire.simpson • 0

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sequencing transcription variantfiltering annotation News

10.2 years ago Matthew Ritchie ▴ 1000

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variantfiltering phastcons

updated 10.4 years ago by Robert Castelo ★ 3.4k • written 10.4 years ago by Stefanie Tauber ▴ 40

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VariantFiltering VariantFiltering

11.3 years ago Robert Castelo ★ 3.4k

9 results • Page 1 of 1

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Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea by snijesh ▴ 200

I would like to clarify whether the command `res <- results(dds, name = "phaseLP.conditionTreated")` is the correct approach to generate …

Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea by James W. MacDonald 68k

Not sure I understand. You ask how to do something and then show how one would do so.

Comment: DiffBind getting Fold values of near 0 by littlefishes20 ▴ 10

Same issues. All peaks return to a fold near 0, although they are significant when visualizing in IGV. Please find the MAplot and volcanoPl…

Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea by snijesh ▴ 200

I have checked DEGs between Solvent Control (SC) of FP and LP and there are noticebale differences in terms of DEGs. ``` # Checking SC in …

Answer: A0A287BB68 not recognized as UNPROT key in org.Ss.eg.db using AnnotationDbi::sel by James W. MacDonald 68k

Apparently it's been over-ridden by a different UniProtKB ID ``` > select(org.Ss.eg.db, "MYH11", "UNIPROT", "SYMBOL") 'select()' retu…

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How to account for solvent controls in DESeq2 when comparing follicular vs luteal phase?

Answer: How to account for solvent controls in DESeq2 when comparing follicular vs lutea

Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi

Can NanoString data be analyzed using DESeq2?

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