Bioconductor Variantfiltering

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1.3k

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VariantAnnotation VariantFiltering

2.2 years ago Bogdan ▴ 670

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731

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VariantFiltering

updated 2.4 years ago by Robert Castelo ★ 3.4k • written 2.4 years ago by Andrew Beggs ▴ 90

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2.8k

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RNAseq123 VariantFiltering Alignment VariantAnnotation

updated 3.1 years ago by James W. MacDonald 68k • written 3.1 years ago by Mohamed ▴ 30

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bioconductor variantfiltering

8.3 years ago Claus.Hultschig • 0

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variantannotation variantfiltering

updated 8.7 years ago by Michael Lawrence ★ 11k • written 8.7 years ago by Bogdan ▴ 670

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VariantFiltering

10.4 years ago claire.simpson • 0

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sequencing transcription variantfiltering annotation News

10.5 years ago Matthew Ritchie ▴ 1000

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variantfiltering phastcons

updated 10.6 years ago by Robert Castelo ★ 3.4k • written 10.6 years ago by Stefanie Tauber ▴ 40

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VariantFiltering VariantFiltering

11.5 years ago Robert Castelo ★ 3.4k

9 results • Page 1 of 1

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Comment: Question about DESeq2 Design for Paired Treatment Study by ATpoint ★ 5.0k

It's a paired analysis so you don't need any patient-specific covariates such as age and sex. What you call batch effect might just be the …

Comment: problem reading bam files into nucleR by efoss ▴ 10

I thought I might be able to track down a problematic line in the bam file by repeatedly splitting the bam file in and then running the co…

Answer: two questions about limma by Gordon Smyth 53k

Answered here: https://support.bioconductor.org/p/16318/

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication? by Ahmed Salah • 0

Thank you very much! will take that into consideration

Comment: Large logFC but somewhat high FDR by JKim • 0

Thank you very much for taking the time to answer the question. I really appreciate your insights and comments.

Votes

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

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