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vignette
•
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0
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2
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705
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Excluding samples as referenced in SummarizedExperiment vignette
SummarizedExperiment
vignette
2.1 years ago
BioInfoBeginnerrr
• 0
4
votes
5
replies
2.5k
views
Error in the vignette for biomaRt (when accessing an ensembl archive)
biomaRt
vignette
updated 3.1 years ago by
ashleymaeconard
▴ 10 • written 4.5 years ago by
Russ Hyde
▴ 10
2
votes
2
replies
945
views
How to write the installation section in the vignette of a package that has not been sent into Bioconductor yet
newpackage
vignette
installation
updated 4.5 years ago by
shepherl
3.8k • written 4.5 years ago by
Krutik Patel
▴ 10
0
votes
1
reply
913
views
Error executing flowcore vignette
flowcore
vignette
software error
updated 6.6 years ago by
Jiang, Mike
★ 1.3k • written 6.6 years ago by
Robert Baer
▴ 70
7
votes
2
replies
1.3k
views
Duplicated author affiliations in BiocStyle-based HTML document
biocstyle
vignette
updated 6.8 years ago by
Andrzej Oleś
▴ 750 • written 6.8 years ago by
Aaron Lun
★ 28k
0
votes
3
replies
2.4k
views
unable to connect to 'string.uzh.ch' on port 80
STRINGdb
vignette
updated 7.0 years ago by
Gregor Rot
▴ 10 • written 7.0 years ago by
mwinerip
• 0
3
votes
3
replies
1.8k
views
Error running CellMix SampleAnalysis vignette
software error
cellmix
vignette
expressionset
7.3 years ago
gabor.halasz
• 0
2
votes
3
replies
2.3k
views
No color support in ggbio for autoplot
ggbio
autoplot
color
vignette
updated 8.2 years ago by
aaron
▴ 10 • written 8.3 years ago by
timothypyork
• 0
1
vote
2
replies
1.6k
views
GitHub Continuous Integration, unit-tests, vignettes: R Packaging
github
vignette
test
developers
updated 8.3 years ago by
Dan Tenenbaum
★ 8.2k • written 8.3 years ago by
anthonycolombo60
• 0
3
votes
2
replies
1.3k
views
question regarding embedding images in vignette when creating bioconductor package
vignette
updated 8.8 years ago by
Dan Tenenbaum
★ 8.2k • written 8.8 years ago by
KB
▴ 50
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Answer: PCA plot suggestions
by
Michael Love
41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
by
ussarizona
▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative?
by
Michael Love
41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Answer: ATACseq merge peaks
by
ATpoint
★ 4.0k
That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…
Comment: Deseq2. decontXcounts not integers. Useful alternative?
by
camp
▴ 10
Yes, @atpoint is correct. decontX decontaminated counts are not integers due to the way the variation inference algorithm works, but you ca…
Votes
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
Comment: biomaRt : No lock file for BiocFileCache
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