Showing : watermelon • reset
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A survey of computational setups for Illumina Infinium DNA methylation EPIC array pipeline
DNAMethylation wateRmelon Computation minfi
3.4 years ago calen.p.ryan • 0
0
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7
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1.7k
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Getting wrong rownames of MSet object when using pfilter from watermelon
wateRmelon Illumina EPIC pfilter
updated 6.1 years ago by • 0 • written 6.1 years ago by • 0
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3
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2.2k
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Combining pfilter (wateRmelon) and preprocessNoob (minfi)
wateRmelon minfi methylation pfilter preprocessNoob
updated 6.3 years ago by ▴ 10 • written 6.3 years ago by • 0
0
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0
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1.6k
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Error in ENmix::bmiq.mc(): BMIQ estimates encountered error, try to run it again
methylation ENmix BMIQ wateRmelon
6.8 years ago moldach ▴ 20
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1
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2.1k
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MethylSet to MethyLumiSet
minfi methylumi watermelon
8.9 years ago Tom ▴ 10
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5
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2.9k
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Different errors when attempting to normalize using wateRmelon (v1.1.18)
wateRmelon methylation EPIC normalization
8.9 years ago Wade Davis ▴ 60
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2
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2.1k
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Error while using BMIQ normalisation on a methylumiSet
limma watermelon methylumi bmiq
updated 9.0 years ago by ▴ 10 • written 9.0 years ago by ▴ 10
1
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2
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2.4k
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QC/normalization standards for cancer studies with 450k array data
minfi watermelon cancer 450k normalization
updated 10.4 years ago by ★ 6.5k • written 10.4 years ago by ▴ 10
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3
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2.7k
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minfi getProbeInfo error ( was WateRmelon betaqn error)
watermelon betaqn pfilter getProbeInfo minfi
10.9 years ago gctromp ▴ 10
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10
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3.0k
views
MethyLumiM to MethyLumiSet?
convert lumi methylumi minfi wateRmelon convert lumi methylumi minfi wateRmelon
updated 12.1 years ago by ★ 4.2k • written 12.1 years ago by ▴ 190
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Answer: NUPOP usage by shepherl 4.2k
You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…
Comment: How can I correctly use phyloseq with Docker? by fnfgame • 0
In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …
Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150
Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k
BTW, I tested with no issue on MacOS ARM on our previous github issue.
Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment by Michael Love 43k
The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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