Showing : watermelon • reset
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A survey of computational setups for Illumina Infinium DNA methylation EPIC array pipeline
DNAMethylation wateRmelon Computation minfi
2.4 years ago calen.p.ryan • 0
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7
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1.3k
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Getting wrong rownames of MSet object when using pfilter from watermelon
wateRmelon Illumina EPIC pfilter
updated 5.1 years ago by • 0 • written 5.1 years ago by • 0
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3
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1.8k
views
Combining pfilter (wateRmelon) and preprocessNoob (minfi)
wateRmelon minfi methylation pfilter preprocessNoob
updated 5.3 years ago by ▴ 10 • written 5.3 years ago by • 0
0
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0
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1.4k
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Error in ENmix::bmiq.mc(): BMIQ estimates encountered error, try to run it again
methylation ENmix BMIQ wateRmelon
5.9 years ago • updated 5.8 years ago moldach ▴ 20
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1.7k
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MethylSet to MethyLumiSet
minfi methylumi watermelon
7.9 years ago Tom ▴ 10
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5
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2.5k
views
Different errors when attempting to normalize using wateRmelon (v1.1.18)
wateRmelon methylation EPIC normalization
8.0 years ago Wade Davis ▴ 60
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2
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1.7k
views
Error while using BMIQ normalisation on a methylumiSet
limma watermelon methylumi bmiq
updated 8.0 years ago by ▴ 10 • written 8.0 years ago by ▴ 10
1
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2
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2.1k
views
QC/normalization standards for cancer studies with 450k array data
minfi watermelon cancer 450k normalization
updated 9.5 years ago by ★ 6.5k • written 9.5 years ago by ▴ 10
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3
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2.4k
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minfi getProbeInfo error ( was WateRmelon betaqn error)
watermelon betaqn pfilter getProbeInfo minfi
9.9 years ago gctromp ▴ 10
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10
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2.5k
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MethyLumiM to MethyLumiSet?
convert lumi methylumi minfi wateRmelon convert lumi methylumi minfi wateRmelon
updated 11.2 years ago by ★ 4.2k • written 11.2 years ago by ▴ 190
10 results • Page 1 of 1
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Answer: DESeq error: counts matrix should be numeric, currently it has mode: character by ATpoint ★ 4.6k
R thinks your data are characters (e.g. "1", "2", instead of 1, 2) so given that your `counts_data` indeed only contains counts, do: `mo…
Comment: Any tools to convert .gff to .gtf format by ControlF5 • 0
Yes, the Appsierra team recently built a tool to convert .gff to .gtf format. [ControlF5][1] is providing the best software testing service…
Comment: EuroBioC2024 abstract submission is open! by Alan Downey • 0
EuroBioC2024 has opened its abstract submission process, presenting an exciting opportunity for researchers to contribute to groundbreaking…
Comment: ChAMP.DMR error - Error in makeGenomicRatioSetFromMatrix by O'Brien • 0
Consult the ChAMP.DMR documentation for more information on supported array types and expected data formats: https://bioconductor.org/packa…
Answer: combining raw counts and estimated counts by O'Brien • 0
It is possible to combine raw counts from TCGA and estimated counts from GEO datasets (Kalisto pseudoalignment) while mitigating batch effe…
Votes
A: GWAS analysis with Illumina HumanOmni5-4 BeadChip - recommended software and wor
A: GWAS analysis with Illumina HumanOmni5-4 BeadChip - recommended software and wor
A: RNA-seq Normalisation - normalise all samples in experiment or only the ones use
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio
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