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watermelon
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1.1k
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A survey of computational setups for Illumina Infinium DNA methylation EPIC array pipeline
DNAMethylation
wateRmelon
Computation
minfi
3.5 years ago
calen.p.ryan
• 0
0
votes
7
replies
1.8k
views
Getting wrong rownames of MSet object when using pfilter from watermelon
wateRmelon
Illumina EPIC
pfilter
updated 6.3 years ago by
lschal
• 0 • written 6.3 years ago by
anne-kristin.stavrum
• 0
1
vote
3
replies
2.3k
views
Combining pfilter (wateRmelon) and preprocessNoob (minfi)
wateRmelon
minfi
methylation
pfilter
preprocessNoob
updated 6.5 years ago by
tgorri
▴ 10 • written 6.5 years ago by
sara.blocquiaux
• 0
0
votes
0
replies
1.7k
views
Error in ENmix::bmiq.mc(): BMIQ estimates encountered error, try to run it again
methylation
ENmix
BMIQ
wateRmelon
7.0 years ago
moldach
▴ 20
0
votes
1
reply
2.1k
views
MethylSet to MethyLumiSet
minfi
methylumi
watermelon
9.1 years ago • updated 9.0 years ago
Tom
▴ 10
0
votes
5
replies
3.1k
views
Different errors when attempting to normalize using wateRmelon (v1.1.18)
wateRmelon
methylation
EPIC
normalization
9.1 years ago
Wade Davis
▴ 60
0
votes
2
replies
2.2k
views
Error while using BMIQ normalisation on a methylumiSet
limma
watermelon
methylumi
bmiq
updated 9.2 years ago by
tgorri
▴ 10 • written 9.2 years ago by
poojitha.stemcell
▴ 10
1
vote
2
replies
2.5k
views
QC/normalization standards for cancer studies with 450k array data
minfi
watermelon
cancer
450k
normalization
updated 10.6 years ago by
Kasper Daniel Hansen
★ 6.5k • written 10.6 years ago by
metamaden
▴ 10
0
votes
3
replies
2.7k
views
minfi getProbeInfo error ( was WateRmelon betaqn error)
watermelon
betaqn
pfilter
getProbeInfo
minfi
11.0 years ago
gctromp
▴ 10
0
votes
10
replies
3.1k
views
MethyLumiM to MethyLumiSet?
convert
lumi
methylumi
minfi
wateRmelon
convert
lumi
methylumi
minfi
wateRmelon
updated 12.3 years ago by
Tim Triche
★ 4.2k • written 12.3 years ago by
Martin Rijlaarsdam
▴ 190
10 results • Page
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Comment: Question on processing compound protein groups in limpa
by
JKim
• 0
Many thanks. I appreciate your advice.
Answer: Question on processing compound protein groups in limpa
by
Gordon Smyth
53k
Different people have different ways of dealing with compound protein groups. You could just leave them in the analysis, in which case limp…
Answer: Correct usage of limpa for protein input
by
Gordon Smyth
53k
limpa can work on protein-level quantifications, but they must be intensity-based and must be on the log scale. From what I read (<https://…
Comment: A problem occurs when running the monocle2
by
a2a2hset32aa
• 0
Troubleshooting monocle2 errors in R 4.5.1 often points to package incompatibilities, particularly with newer versions of igraph. For resea…
Comment: Deadline Extended: EuroBioC2026 Call for Abstracts
by
a2a2hset32aa
• 0
Attending EuroBioC2026 is an excellent way for researchers to explore the intersection of technology and biology. For those seeking high qu…
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Answer: Question on processing compound protein groups in limpa
Answer: Correct usage of limpa for protein input
Answer: Correct usage of limpa for protein input
Answer: Correct usage of limpa for protein input
A: Interpretaion of dendrogram height in WGCNA?
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chirag.parsania
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