Bioconductor Watermelon

Showing : watermelon • reset

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994

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DNAMethylation wateRmelon Computation minfi

3.3 years ago calen.p.ryan • 0

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1.7k

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wateRmelon Illumina EPIC pfilter

updated 6.0 years ago by lschal • 0 • written 6.0 years ago by anne-kristin.stavrum • 0

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2.1k

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wateRmelon minfi methylation pfilter preprocessNoob

updated 6.2 years ago by tgorri ▴ 10 • written 6.3 years ago by sara.blocquiaux • 0

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1.6k

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methylation ENmix BMIQ wateRmelon

6.8 years ago moldach ▴ 20

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2.0k

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minfi methylumi watermelon

8.8 years ago Tom ▴ 10

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2.9k

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wateRmelon methylation EPIC normalization

8.9 years ago Wade Davis ▴ 60

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2.0k

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limma watermelon methylumi bmiq

updated 9.0 years ago by tgorri ▴ 10 • written 9.0 years ago by poojitha.stemcell ▴ 10

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2.4k

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minfi watermelon cancer 450k normalization

updated 10.4 years ago by Kasper Daniel Hansen ★ 6.5k • written 10.4 years ago by metamaden ▴ 10

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2.7k

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watermelon betaqn pfilter getProbeInfo minfi

10.8 years ago gctromp ▴ 10

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3.0k

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convert lumi methylumi minfi wateRmelon convert lumi methylumi minfi wateRmelon

updated 12.1 years ago by Tim Triche ★ 4.2k • written 12.1 years ago by Martin Rijlaarsdam ▴ 190

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Comment: upstream git branches of bioc-release by TrentonCollier99 • 0

Thank you very much for taking the time to answer the question. I really appreciate your insights and comments. https://bioc-release.r-univ…

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication? by Ahmed Salah • 0

Thank you very much! will take that into consideration

Comment: Large logFC but somewhat high FDR by JKim • 0

Thank you very much for taking the time to answer the question. I really appreciate your insights and comments.

Comment: upstream git branches of bioc-release by Jeroen ▴ 10

OK I have updated https://bioc-release.r-universe.dev accordingly. Let me know if you find version differences when mirroring binaries.

Comment: Large logFC but somewhat high FDR by Gordon Smyth 53k

I don't know what `tp1` is. The relevant histogram would be: ``` hist(fit2$p.value[,"KO_vs_WT"]) ```

Votes

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

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Scholar to Gordon Smyth 53k