Showing : without Replicate • reset
1
vote
6
replies
3.9k
views
Can I use EdgeR log2(cpm) instead of voom log2(cpm) to be analyzed as microarray data?
limma edger timecourse without replicate voom
written 9.2 years ago by ▴ 10
0
votes
1
reply
981
views
BSmooth does give DMRs without no replicate data sets
bsmooth without replicate dimension
7.6 years ago nilaycan • 0
0
votes
3
replies
1.5k
views
time-series, no replicates, no control groupe
deseq2 time-series without replicate
updated 7.6 years ago by 43k • written 7.6 years ago by • 0
1
vote
5
replies
4.0k
views
steps to get up and down regulated genes using DESeq2
deseq2 without replicate no replicates
updated 7.7 years ago by 43k • written 7.7 years ago by • 0
5
votes
6
replies
6.7k
views
Analyzing data without replicates using DiffBind
diffbind bioconductor differential binding analysis without replicate chipseq
8.2 years ago Hesh ▴ 10
4
votes
5
replies
3.2k
views
edgeR- DE analysis with no replicates
edger differential gene expression without replicate nested design help
updated 9.6 years ago by ★ 29k • written 9.6 years ago by • 0
3
votes
6
replies
2.1k
views
Question about edgeR usage with one case and multiple controls
edgeR differential expression without replicate
9.6 years ago gavin.oliver • 0
0
votes
3
replies
1.8k
views
to call differential peaks among 4 peaksets all together using DiffBind
diffbind without replicate
updated 9.9 years ago by ▴ 670 • written 9.9 years ago by • 0
2
votes
7
replies
3.5k
views
edgeR for with no Replicate
edger without replicate
updated 10.1 years ago by ▴ 900 • written 10.1 years ago by • 0
1
vote
1
reply
1.8k
views
edgeR for without Replicate
edger without replicate
updated 10.1 years ago by ★ 29k • written 10.1 years ago by • 0
0
votes
10
replies
5.8k
views
DESeq2 analysis without Replicate
without Replicate deseq2
updated 4.6 years ago by 43k • written 10.2 years ago by • 0
11 results • Page 1 of 1
Recent ...
Replies
Comment: soGGi error by shepherl 4.3k
We have tried to contact the soGGi maintainer to have them update the package to the newer version of gglot2 but they have so far been unre…
Comment: using limma trend workflow in CAMERA by Gordon Smyth 53k
No, `trend.var=TRUE` and `trend=TRUE` are not needed in any voom pipeline, because the trend is already incorporated into the voom weights.
Comment: Questions about bacon QC and correction on EWAS results by Tikaaa2sahaaaq2c • 0
In the world of mobile games, the 88ef game download has gained traction for its performance driven design [free download][1], similar to …
Comment: using limma trend workflow in CAMERA by A.Barden ▴ 20
Do you need to set trend.var=TRUE when using camera in the limma-voom pipeline with RNA-Seq data (as apposed to limma-trend pipeline)?
Comment: Upcoming Ensembl API and data access changes - new blog post available by Tikaaa2sahaaaq2c • 0
Just as the Ensembl team transitions to a new platform for streamlined data access, diners can benefit from a digital newks menu prices con…
Votes
Answer: DiffBind differential analysis
Answer: Limma-voom sample weights and impact on DEG numbers
C: Why limma, edgeR, and DESeq did not implement fold change moderation first?
Comment: using limma trend workflow in CAMERA
C: z-score with DESeq2?
Awards • All
Popular Question to shepherl 4.3k
Popular Question to Steve Lianoglou ★ 13k
Teacher to Michael Love 43k
Supporter to fl ▴ 20
Popular Question to James W. MacDonald 68k
Locations • All
United States, 1 minute ago
United Kingdom, 39 minutes ago
United States, 52 minutes ago
United States, 3 hours ago
The city by the bay, 3 hours ago
Traffic: 1095 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6