Showing : without Replicate • reset
1
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Can I use EdgeR log2(cpm) instead of voom log2(cpm) to be analyzed as microarray data?
limma edger timecourse without replicate voom
written 8.0 years ago by ▴ 10
0
votes
1
reply
721
views
BSmooth does give DMRs without no replicate data sets
bsmooth without replicate dimension
6.4 years ago nilaycan • 0
0
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3
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1.2k
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time-series, no replicates, no control groupe
deseq2 time-series without replicate
updated 6.4 years ago by 43k • written 6.4 years ago by • 0
1
vote
5
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3.4k
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steps to get up and down regulated genes using DESeq2
deseq2 without replicate no replicates
updated 6.5 years ago by 43k • written 6.5 years ago by • 0
5
votes
6
replies
5.2k
views
Analyzing data without replicates using DiffBind
diffbind bioconductor differential binding analysis without replicate chipseq
7.0 years ago Hesh ▴ 10
4
votes
5
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2.7k
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edgeR- DE analysis with no replicates
edger differential gene expression without replicate nested design help
updated 8.4 years ago by ★ 28k • written 8.4 years ago by • 0
3
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6
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1.5k
views
Question about edgeR usage with one case and multiple controls
edgeR differential expression without replicate
8.4 years ago gavin.oliver • 0
0
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3
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1.6k
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to call differential peaks among 4 peaksets all together using DiffBind
diffbind without replicate
updated 8.7 years ago by ▴ 670 • written 8.7 years ago by • 0
2
votes
7
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3.0k
views
edgeR for with no Replicate
edger without replicate
updated 9.0 years ago by ▴ 900 • written 9.0 years ago by • 0
1
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1
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1.6k
views
edgeR for without Replicate
edger without replicate
updated 9.0 years ago by ★ 28k • written 9.0 years ago by • 0
0
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10
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5.1k
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DESeq2 analysis without Replicate
without Replicate deseq2
updated 3.4 years ago by 43k • written 9.0 years ago by • 0
11 results • Page 1 of 1
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Comment: Differential Expression Genes as Independent Variables by Dario Strbenac ★ 1.5k
Also, the reason why gene abundance is the dependent variable and is iterated over is that there are far more genes than there are samples …
Comment: rrvgo::calculateSimMatrix() error by Phila • 0
Thanks for sharing the solution. It helps me. [nced cloud][1] [1]: https://my-ncedcloud-login.us/
Comment: Merge Replicates vs Mixed Model by gabriel.hoffman ▴ 170
For your proteomics data, your normalization is correct. I had assumed it was RNA-seq because that is what I think about most. When using…
Comment: What type of counts data to import for performing Isoform analysis in edgeR by mohammedtoufiq91 ▴ 10
@gordonsmyth I will re-run Salmon with the --numGibbsSamples=50 option. Thank you.
Comment: Differential Expression Genes as Independent Variables by Gordon Smyth 52k
Such an analysis cannot be done in limma. Sorry, I cannot tell you how to do it or even whether it is possible.
Votes
Comment: What type of counts data to import for performing Isoform analysis in edgeR
Answer: What type of counts data to import for performing Isoform analysis in edgeR
Transcript-level differential expression using DESeq2
Comment: What type of counts data to import for performing Isoform analysis in edgeR
Answer: What type of counts data to import for performing Isoform analysis in edgeR
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