Bioconductor Without Replicate

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3.3k

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limma edger timecourse without replicate voom

written 8.4 years ago by Camila Orellana ▴ 10

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775

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bsmooth without replicate dimension

6.7 years ago nilaycan • 0

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1.3k

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deseq2 time-series without replicate

updated 6.7 years ago by Michael Love 43k • written 6.7 years ago by bahlv • 0

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3.6k

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deseq2 without replicate no replicates

updated 6.9 years ago by Michael Love 43k • written 6.9 years ago by Tony • 0

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5.7k

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diffbind bioconductor differential binding analysis without replicate chipseq

7.4 years ago • updated 7.3 years ago Hesh ▴ 10

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2.8k

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edger differential gene expression without replicate nested design help

updated 8.7 years ago by Aaron Lun ★ 28k • written 8.7 years ago by knipehf • 0

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1.7k

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edgeR differential expression without replicate

8.8 years ago gavin.oliver • 0

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1.6k

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diffbind without replicate

updated 9.0 years ago by Gord Brown ▴ 670 • written 9.0 years ago by yiweihe • 0

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3.1k

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edger without replicate

updated 9.3 years ago by Yunshun Chen ▴ 900 • written 9.3 years ago by Sushant Pawar • 0

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1.6k

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edger without replicate

updated 9.3 years ago by Aaron Lun ★ 28k • written 9.3 years ago by Sushant Pawar • 0

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5.3k

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without Replicate deseq2

updated 3.7 years ago by Michael Love 43k • written 9.3 years ago by Sushant Pawar • 0

11 results • Page 1 of 1

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Comment: Annotation package for Manduca sexta by GA ▴ 10

Thank you!

Comment: Improving performance of edgeR and limma while adjusting for multiple confounder by ATpoint ★ 4.8k

If 2 minutes is inacceptable to you then you can still fall back to limma-trend which should give a dramatic speedup and finish in seconds.…

Comment: getBM from biomaRt inconsistencies found with .gtf files across multiple species by Mike Smith ★ 6.6k

Great, thanks for the update from Ensembl. So the most relevant part of 'Location: Scaffold HG1277_PATCH: 137,021-141,806 forward strand' …

Answer: Improving performance of edgeR and limma while adjusting for multiple confounder by Gordon Smyth 52k

We recommend that you use voomLmFit() instead of voom+lmFit. We are pretty proud of the speed of glmQLFit and voom, and we hadn't expected…

Answer: Merging EPICV1 and V2 betas by James W. MacDonald 68k

It appears that [SeSAMe][1] has functions meant to do that sort of thing. [1]: https://bioconductor.org/packages/release/bioc/vignet…

Votes

Looking for equivalent EPIC chip v1 vs. v2 annotation variables

Properly constructing a hypergeometric test

A: Is logFC a log2 fold change or some other base in scran::findMarkers

Comment: Error in retrieving clinical data

What is the cheapest day to fly on American Airlines? {Ask_Expert}

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