Showing : without Replicate • reset
1
vote
6
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3.1k
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Can I use EdgeR log2(cpm) instead of voom log2(cpm) to be analyzed as microarray data?
limma edger timecourse without replicate voom
written 8.0 years ago by ▴ 10
0
votes
1
reply
714
views
BSmooth does give DMRs without no replicate data sets
bsmooth without replicate dimension
6.3 years ago nilaycan • 0
0
votes
3
replies
1.2k
views
time-series, no replicates, no control groupe
deseq2 time-series without replicate
updated 6.3 years ago by 42k • written 6.3 years ago by • 0
1
vote
5
replies
3.4k
views
steps to get up and down regulated genes using DESeq2
deseq2 without replicate no replicates
updated 6.5 years ago by 42k • written 6.5 years ago by • 0
5
votes
6
replies
5.2k
views
Analyzing data without replicates using DiffBind
diffbind bioconductor differential binding analysis without replicate chipseq
7.0 years ago Hesh ▴ 10
4
votes
5
replies
2.7k
views
edgeR- DE analysis with no replicates
edger differential gene expression without replicate nested design help
updated 8.4 years ago by ★ 28k • written 8.4 years ago by • 0
3
votes
6
replies
1.5k
views
Question about edgeR usage with one case and multiple controls
edgeR differential expression without replicate
8.4 years ago gavin.oliver • 0
0
votes
3
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1.6k
views
to call differential peaks among 4 peaksets all together using DiffBind
diffbind without replicate
updated 8.6 years ago by ▴ 670 • written 8.7 years ago by • 0
2
votes
7
replies
3.0k
views
edgeR for with no Replicate
edger without replicate
updated 8.9 years ago by ▴ 870 • written 8.9 years ago by • 0
1
vote
1
reply
1.5k
views
edgeR for without Replicate
edger without replicate
updated 8.9 years ago by ★ 28k • written 8.9 years ago by • 0
0
votes
10
replies
5.1k
views
DESeq2 analysis without Replicate
without Replicate deseq2
updated 3.3 years ago by 42k • written 8.9 years ago by • 0
11 results • Page 1 of 1
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Comment: Bioconductor 3.18 is Released! by thelmatertl • 0
This is a release that expresses gratitude to the developers and community members for their contributions and the new features enhance the…
Comment: ColData and ERROR: rows did not converge in beta, labelled in mcols(object)$beta by daniela.gutierrezandrade • 0
Hello, I am running into a similar issue. After setting the design, at the beginning of the analysis I filter rows with low counts. d…
Comment: Limma- Print-tip loess normalisation-printer layout information does not match M by dseauer • 0
Thank you so much for all of your help! I really appreciate it!
Comment: Limma- Print-tip loess normalisation-printer layout information does not match M by Gordon Smyth 51k
Thanks for extra info, but be careful that the Bioconductor support site requires code to be an markdown format. Copying code with prompts …
Comment: Limma- Print-tip loess normalisation-printer layout information does not match M by dseauer • 0
Thank you so much for your reply! I am sincerely sorry- of course I do not have multiple GAL files- just one- I meant gpr files! I am so so…
Votes
A: Recommendations for combining multiple 10x runs into one SingleCellExperiment
Answer: Handling biological replicates in DESeq2
Comment: biomaRt rnorvegicus_gene_ensembl not available anymore
biomaRt rnorvegicus_gene_ensembl not available anymore
A: Does edgeR need to specify reference group?
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