Bioconductor Without replicate

Showing : without replicate • reset

vote

replies

3.1k

views

limma edger timecourse without replicate voom

written 8.0 years ago by Camila Orellana ▴ 10

votes

714

views

bsmooth without replicate dimension

6.3 years ago nilaycan • 0

votes

replies

1.2k

views

deseq2 time-series without replicate

updated 6.3 years ago by Michael Love 42k • written 6.3 years ago by bahlv • 0

vote

replies

3.4k

views

deseq2 without replicate no replicates

updated 6.5 years ago by Michael Love 42k • written 6.5 years ago by Tony • 0

votes

replies

5.2k

views

diffbind bioconductor differential binding analysis without replicate chipseq

7.0 years ago Hesh ▴ 10

votes

replies

2.7k

views

edger differential gene expression without replicate nested design help

updated 8.4 years ago by Aaron Lun ★ 28k • written 8.4 years ago by knipehf • 0

votes

replies

1.5k

views

edgeR differential expression without replicate

8.4 years ago gavin.oliver • 0

votes

replies

1.6k

views

diffbind without replicate

updated 8.6 years ago by Gord Brown ▴ 670 • written 8.6 years ago by yiweihe • 0

votes

replies

3.0k

views

edger without replicate

updated 8.9 years ago by Yunshun Chen ▴ 870 • written 8.9 years ago by Sushant Pawar • 0

vote

1.5k

views

edger without replicate

updated 8.9 years ago by Aaron Lun ★ 28k • written 8.9 years ago by Sushant Pawar • 0

votes

replies

5.1k

views

without Replicate deseq2

updated 3.3 years ago by Michael Love 42k • written 8.9 years ago by Sushant Pawar • 0

11 results • Page 1 of 1

Recent ...

Replies

Answer: Is it possible to parallelise saveHDF5SummarizedExperiment by Hervé Pagès 16k

Hi Stefano, Unfortunately HDF5 doesn't support concurrent writing so parallelising is not an option. A few things that maybe could help: …

Comment: incomplete official symbol mitochondrial genes in org.Hs.eg.db? by James W. MacDonald 67k

It's a simple two-liner in [getsrc.sh][1] ``` awk -F'\t' 'BEGIN {OFS=FS} {if($3 != $11 && $11 != "-") $3 = $11; print $0}' gene_info > tmp…

Comment: incomplete official symbol mitochondrial genes in org.Hs.eg.db? by Guido Hooiveld ★ 4.1k

Thanks for changing this! Just to confirm I understood it correctly: the `Symbol` will (still) be used, and will be replaced by `Symbol fro…

Comment: incomplete official symbol mitochondrial genes in org.Hs.eg.db? by James W. MacDonald 67k

OK, there are 157 MT genes in maybe 6 species for which the symbols are not correct, and I added code to swap the 'Symbol from nomenclature…

Comment: Tximport with RSEM error by Michael Love 42k

Would you post a new issue with example code and maybe what the files look like?

Votes

Comment: incomplete official symbol mitochondrial genes in org.Hs.eg.db?

Answer: Supercells with Basilisk fails for dtype('float64') to dtype('int64') conversion

A: GOseq analysis with only upregulated or downregulated genes

Answer: Properly constructing a hypergeometric test

Awards • All