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without replicate
•
reset
1
vote
6
replies
3.2k
views
Can I use EdgeR log2(cpm) instead of voom log2(cpm) to be analyzed as microarray data?
limma
edger
timecourse
without replicate
voom
written 8.3 years ago by
Camila Orellana
▴ 10
0
votes
1
reply
755
views
BSmooth does give DMRs without no replicate data sets
bsmooth
without replicate
dimension
6.6 years ago
nilaycan
• 0
0
votes
3
replies
1.2k
views
time-series, no replicates, no control groupe
deseq2
time-series
without replicate
updated 6.6 years ago by
Michael Love
43k • written 6.6 years ago by
bahlv
• 0
1
vote
5
replies
3.6k
views
steps to get up and down regulated genes using DESeq2
deseq2
without replicate
no replicates
updated 6.8 years ago by
Michael Love
43k • written 6.8 years ago by
Tony
• 0
5
votes
6
replies
5.5k
views
Analyzing data without replicates using DiffBind
diffbind
bioconductor
differential binding analysis
without replicate
chipseq
7.3 years ago • updated 7.2 years ago
Hesh
▴ 10
4
votes
5
replies
2.8k
views
edgeR- DE analysis with no replicates
edger
differential gene expression
without replicate
nested design
help
updated 8.6 years ago by
Aaron Lun
★ 28k • written 8.6 years ago by
knipehf
• 0
3
votes
6
replies
1.6k
views
Question about edgeR usage with one case and multiple controls
edgeR
differential expression
without replicate
8.7 years ago
gavin.oliver
• 0
0
votes
3
replies
1.6k
views
to call differential peaks among 4 peaksets all together using DiffBind
diffbind
without replicate
updated 8.9 years ago by
Gord Brown
▴ 670 • written 8.9 years ago by
yiweihe
• 0
2
votes
7
replies
3.1k
views
edgeR for with no Replicate
edger
without replicate
updated 9.2 years ago by
Yunshun Chen
▴ 900 • written 9.2 years ago by
Sushant Pawar
• 0
1
vote
1
reply
1.6k
views
edgeR for without Replicate
edger
without replicate
updated 9.2 years ago by
Aaron Lun
★ 28k • written 9.2 years ago by
Sushant Pawar
• 0
0
votes
10
replies
5.2k
views
DESeq2 analysis without Replicate
without Replicate
deseq2
updated 3.6 years ago by
Michael Love
43k • written 9.2 years ago by
Sushant Pawar
• 0
11 results • Page
1 of 1
Recent ...
Replies
Comment: How to formulate 2 factor nested design in DESeq2
by
Mariane
• 0
Hi JK Kim, I'm having a problem similar to the one you reported. Could you please tell me how you solved this problem? Thanks
Comment: batch effect removal for agilent microarray data
by
gaye.yilmaz
• 0
Thank you
Answer: Pathview visualisation not including positive log2 fold changes
by
James W. MacDonald
68k
Without providing a self-contained example, nobody can tell you if/where you went wrong. Since you get a KEGG pathway with some of the gene…
Comment: Differential variance analysis - can i use deseq2
by
Marwan
• 0
Thanks Michael for your answer, i didnt mean to use Deseq2 directly for the variance testing, but more like asking if using the (VST) data…
Answer: Differential variance analysis - can i use deseq2
by
Michael Love
43k
We don't have a test of differential variance but other Bioconductor packages can, check similar posts (even on the right side bar) or use …
Votes
Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?
Suggesting changing the "reply-to" field to the mailing list address.
Answer: UniProt.ws query for single UniRef90 ID takes several minutes
A: How to extract DESeq2 results for an interaction design
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K?
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