Showing : without replicate • reset
1
vote
6
replies
3.8k
views
Can I use EdgeR log2(cpm) instead of voom log2(cpm) to be analyzed as microarray data?
limma edger timecourse without replicate voom
written 9.2 years ago by ▴ 10
0
votes
1
reply
964
views
BSmooth does give DMRs without no replicate data sets
bsmooth without replicate dimension
7.5 years ago nilaycan • 0
0
votes
3
replies
1.5k
views
time-series, no replicates, no control groupe
deseq2 time-series without replicate
updated 7.5 years ago by 43k • written 7.5 years ago by • 0
1
vote
5
replies
3.9k
views
steps to get up and down regulated genes using DESeq2
deseq2 without replicate no replicates
updated 7.7 years ago by 43k • written 7.7 years ago by • 0
5
votes
6
replies
6.6k
views
Analyzing data without replicates using DiffBind
diffbind bioconductor differential binding analysis without replicate chipseq
8.2 years ago Hesh ▴ 10
4
votes
5
replies
3.1k
views
edgeR- DE analysis with no replicates
edger differential gene expression without replicate nested design help
updated 9.6 years ago by ★ 29k • written 9.6 years ago by • 0
3
votes
6
replies
2.0k
views
Question about edgeR usage with one case and multiple controls
edgeR differential expression without replicate
9.6 years ago gavin.oliver • 0
0
votes
3
replies
1.8k
views
to call differential peaks among 4 peaksets all together using DiffBind
diffbind without replicate
updated 9.8 years ago by ▴ 670 • written 9.8 years ago by • 0
2
votes
7
replies
3.5k
views
edgeR for with no Replicate
edger without replicate
updated 10.1 years ago by ▴ 900 • written 10.1 years ago by • 0
1
vote
1
reply
1.7k
views
edgeR for without Replicate
edger without replicate
updated 10.1 years ago by ★ 29k • written 10.1 years ago by • 0
0
votes
10
replies
5.8k
views
DESeq2 analysis without Replicate
without Replicate deseq2
updated 4.5 years ago by 43k • written 10.1 years ago by • 0
11 results • Page 1 of 1
Recent ...
Replies
Answer: When to use edgeR or limma by James W. MacDonald 68k
I would use edgeR's quasi-likelihood model for any analysis with a smaller number of observations (like 3 vs 3 or similar), but if you have…
Answer: limpa-blank normalization and Spectronaut's PTM stoichiometry by Gordon Smyth 53k
limpa reads standard feature-level output from Spectronaut. You do not need to make any changes to the output before reading it into limpa.…
Comment: Question about the filterByExpr function inputs in edgeR by mohammedtoufiq91 ▴ 10
@gordonsmyth Noted, thank you very much.
Comment: Question about the filterByExpr function inputs in edgeR by Gordon Smyth 53k
Regarding edgeR v4 filtering, I didn't mention anything about a minimum count of 10 but rather said "a positive count". So a minimalistic f…
Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry by JKim • 0
Hi Emily, He left some comments regarding normalization. Here is the relevant quote: > The EList object produced by dpcQuant(), containi…
Votes
Comment: Question about the filterByExpr function inputs in edgeR
Answer: Question about the filterByExpr function inputs in edgeR
Answer: Question about the filterByExpr function inputs in edgeR
A: DESeq2: What is the unit of DESeq2 normalized read count (VST)? Is it tag per mi
Answer: Clarification on counting in Rsubread (featureCounts)
Awards • All
Popular Question to Stephanie M. Gogarten ▴ 890
Autobiographer to Frances Turner ▴ 20
Popular Question to maltethodberg ▴ 180
Popular Question to mohammedtoufiq91 ▴ 10
Popular Question to Lluís Revilla Sancho ▴ 760
Locations • All
United States, just now
United States, 6 minutes ago
University of Washington, 28 minutes ago
United States, 31 minutes ago
United States, 47 minutes ago
Traffic: 1027 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6