Showing : without replicate • reset
1
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Can I use EdgeR log2(cpm) instead of voom log2(cpm) to be analyzed as microarray data?
limma edger timecourse without replicate voom
written 9.0 years ago by ▴ 10
0
votes
1
reply
915
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BSmooth does give DMRs without no replicate data sets
bsmooth without replicate dimension
7.3 years ago nilaycan • 0
0
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3
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1.4k
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time-series, no replicates, no control groupe
deseq2 time-series without replicate
updated 7.3 years ago by 43k • written 7.3 years ago by • 0
1
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5
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3.9k
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steps to get up and down regulated genes using DESeq2
deseq2 without replicate no replicates
updated 7.5 years ago by 43k • written 7.5 years ago by • 0
5
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6
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6.4k
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Analyzing data without replicates using DiffBind
diffbind bioconductor differential binding analysis without replicate chipseq
8.0 years ago Hesh ▴ 10
4
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5
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3.0k
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edgeR- DE analysis with no replicates
edger differential gene expression without replicate nested design help
updated 9.4 years ago by ★ 29k • written 9.4 years ago by • 0
3
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6
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1.9k
views
Question about edgeR usage with one case and multiple controls
edgeR differential expression without replicate
9.4 years ago gavin.oliver • 0
0
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3
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1.8k
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to call differential peaks among 4 peaksets all together using DiffBind
diffbind without replicate
updated 9.6 years ago by ▴ 670 • written 9.6 years ago by • 0
2
votes
7
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3.3k
views
edgeR for with no Replicate
edger without replicate
updated 9.9 years ago by ▴ 900 • written 9.9 years ago by • 0
1
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1
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1.7k
views
edgeR for without Replicate
edger without replicate
updated 9.9 years ago by ★ 29k • written 9.9 years ago by • 0
0
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10
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5.6k
views
DESeq2 analysis without Replicate
without Replicate deseq2
updated 4.3 years ago by 43k • written 9.9 years ago by • 0
11 results • Page 1 of 1
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Comment: Issues with downloading biomaRt - SeqInfo and S4 Vectors by James W. MacDonald 68k
Note that `S4Vectors` contains source code, so you will also need to [install RTools first][1]. [1]: https://cran.r-project.org/bin/win…
Answer: Issues with downloading biomaRt - SeqInfo and S4 Vectors by shepherl 4.2k
Our windows binaries are currently lagging behind as we are currently do not have a windows builder. If you are on windows you can try ins…
Comment: Issues with downloading biomaRt - SeqInfo and S4 Vectors by shepherl 4.2k
Can you please provide your `sessionInfo()` after doing `library("S4Vectors")`
Comment: VariantAnnotation does escape = within header string quotes by Daniel Cameron ▴ 40
I'm just stripping the entire line as a workaround using `meta(header(vcf))$DRAGENCommandLine = NULL`. Not ideal but at least subsequent pa…
Comment: Setting up a DESeq2 Design with Paired Data by Alexander • 0
Hi Kevin, Firstly, thank you so much for not only a very prompt response, but one that is incredibly insightful and helps me learn DESeq2 …
Votes
Answer: DESeq2 design for haplotype MPRA
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Suppress warning in RHDF5 write
Answer: Suppress warning in RHDF5 write
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