Showing : without replicate • reset
1
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6
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Can I use EdgeR log2(cpm) instead of voom log2(cpm) to be analyzed as microarray data?
limma edger timecourse without replicate voom
written 8.4 years ago by ▴ 10
0
votes
1
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773
views
BSmooth does give DMRs without no replicate data sets
bsmooth without replicate dimension
6.7 years ago nilaycan • 0
0
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3
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1.3k
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time-series, no replicates, no control groupe
deseq2 time-series without replicate
updated 6.7 years ago by 43k • written 6.7 years ago by • 0
1
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5
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3.6k
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steps to get up and down regulated genes using DESeq2
deseq2 without replicate no replicates
updated 6.8 years ago by 43k • written 6.8 years ago by • 0
5
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6
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5.7k
views
Analyzing data without replicates using DiffBind
diffbind bioconductor differential binding analysis without replicate chipseq
7.3 years ago Hesh ▴ 10
4
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5
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2.8k
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edgeR- DE analysis with no replicates
edger differential gene expression without replicate nested design help
updated 8.7 years ago by ★ 28k • written 8.7 years ago by • 0
3
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6
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1.7k
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Question about edgeR usage with one case and multiple controls
edgeR differential expression without replicate
8.8 years ago gavin.oliver • 0
0
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3
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1.6k
views
to call differential peaks among 4 peaksets all together using DiffBind
diffbind without replicate
updated 9.0 years ago by ▴ 670 • written 9.0 years ago by • 0
2
votes
7
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3.1k
views
edgeR for with no Replicate
edger without replicate
updated 9.3 years ago by ▴ 900 • written 9.3 years ago by • 0
1
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1
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1.6k
views
edgeR for without Replicate
edger without replicate
updated 9.3 years ago by ★ 28k • written 9.3 years ago by • 0
0
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10
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5.3k
views
DESeq2 analysis without Replicate
without Replicate deseq2
updated 3.7 years ago by 43k • written 9.3 years ago by • 0
11 results • Page 1 of 1
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Answer: best way to grouping GSM belonging to different datasets (with different platfor by James W. MacDonald 68k
The only defensible way is to make comparisons within experiments and then do a meta-analysis. But that assumes you have identified multipl…
Comment: DESeq2 estimateSizeFactors with control genes by sofia.rigou • 0
I am also trying to use this function to estimate sizefactor based on RT-dPCR data but estimateSizeFactor only takes integers. Should I mul…
Comment: DiffBind custom normalization factor by Abbie • 0
Hello! Thanks so much for adding dba.normalize and all the documentation in the manual! I'm hoping I can ask a follow-up question here. I…
Answer: CpGs with genomic positions greater than the chromosome size in EPICv2? by James W. MacDonald 68k
All of the annotation packages provided by Bioconductor are simply repackaging of existing data from one or more sources. In this case, the…
Comment: Using TPM from tximport of Salmon output for singscore by Kent • 0
Thank you for the suggestions Michael. Would you say that after filtering out the low count genes, `rlog(counts, blind = T)` is doing the s…
Votes
clusterProfiler-GO enrichment Error
A: Machine learning in R book
Data preparation and Machine learning on time course RNAseq data
Data preparation and Machine learning on time course RNAseq data
Answer: Use of org.Rn.eg.db with GRCr8 reference genome
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