Showing : without replicate • reset
1
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6
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Can I use EdgeR log2(cpm) instead of voom log2(cpm) to be analyzed as microarray data?
limma edger timecourse without replicate voom
written 8.1 years ago by ▴ 10
0
votes
1
reply
732
views
BSmooth does give DMRs without no replicate data sets
bsmooth without replicate dimension
6.5 years ago nilaycan • 0
0
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3
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1.2k
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time-series, no replicates, no control groupe
deseq2 time-series without replicate
updated 6.5 years ago by 43k • written 6.5 years ago by • 0
1
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5
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3.5k
views
steps to get up and down regulated genes using DESeq2
deseq2 without replicate no replicates
updated 6.6 years ago by 43k • written 6.6 years ago by • 0
5
votes
6
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5.3k
views
Analyzing data without replicates using DiffBind
diffbind bioconductor differential binding analysis without replicate chipseq
7.1 years ago Hesh ▴ 10
4
votes
5
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2.7k
views
edgeR- DE analysis with no replicates
edger differential gene expression without replicate nested design help
updated 8.5 years ago by ★ 28k • written 8.5 years ago by • 0
3
votes
6
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1.6k
views
Question about edgeR usage with one case and multiple controls
edgeR differential expression without replicate
8.5 years ago gavin.oliver • 0
0
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3
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1.6k
views
to call differential peaks among 4 peaksets all together using DiffBind
diffbind without replicate
updated 8.8 years ago by ▴ 670 • written 8.8 years ago by • 0
2
votes
7
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3.0k
views
edgeR for with no Replicate
edger without replicate
updated 9.0 years ago by ▴ 900 • written 9.0 years ago by • 0
1
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1
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1.6k
views
edgeR for without Replicate
edger without replicate
updated 9.0 years ago by ★ 28k • written 9.0 years ago by • 0
0
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10
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5.1k
views
DESeq2 analysis without Replicate
without Replicate deseq2
updated 3.5 years ago by 43k • written 9.0 years ago by • 0
11 results • Page 1 of 1
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Answer: DESeq error: counts matrix should be numeric, currently it has mode: character by ATpoint ★ 4.6k
R thinks your data are characters (e.g. "1", "2", instead of 1, 2) so given that your `counts_data` indeed only contains counts, do: `mo…
Comment: Any tools to convert .gff to .gtf format by ControlF5 • 0
Yes, the Appsierra team recently built a tool to convert .gff to .gtf format. [ControlF5][1] is providing the best software testing service…
Comment: EuroBioC2024 abstract submission is open! by Alan Downey • 0
EuroBioC2024 has opened its abstract submission process, presenting an exciting opportunity for researchers to contribute to groundbreaking…
Comment: ChAMP.DMR error - Error in makeGenomicRatioSetFromMatrix by O'Brien • 0
Consult the ChAMP.DMR documentation for more information on supported array types and expected data formats: https://bioconductor.org/packa…
Answer: combining raw counts and estimated counts by O'Brien • 0
It is possible to combine raw counts from TCGA and estimated counts from GEO datasets (Kalisto pseudoalignment) while mitigating batch effe…
Votes
A: GWAS analysis with Illumina HumanOmni5-4 BeadChip - recommended software and wor
A: GWAS analysis with Illumina HumanOmni5-4 BeadChip - recommended software and wor
A: RNA-seq Normalisation - normalise all samples in experiment or only the ones use
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio
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