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questions
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0
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13
views
Dominance Index for Shotgun Metagenomics Data
microbiome
3 hours ago
Dario Strbenac
★ 1.5k
0
votes
0
replies
33
views
Exon-exon Junction Analysis for Variable-length Exons
Rsubread
2 days ago
Dario Strbenac
★ 1.5k
2
votes
2
replies
170
views
Bluster and Varieties of Louvain Clulstering
bluster
updated 21 days ago by
ATpoint
★ 4.0k • written 21 days ago by
Dario Strbenac
★ 1.5k
2
votes
1
reply
225
views
Existence of Bioconductor versus Seurat Software Ecosystems Quantitative Comparison
scran
bluster
scater
scuttle
updated 4 weeks ago by
ATpoint
★ 4.0k • written 4 weeks ago by
Dario Strbenac
★ 1.5k
3
votes
3
replies
337
views
plotUMAP Gene Set Faceted
scater
updated 12 weeks ago by
alan.ocallaghan
▴ 160 • written 12 weeks ago by
Dario Strbenac
★ 1.5k
1
vote
1
reply
233
views
plotUMAP and ggplotly Cell IDs Display
scater
updated 12 weeks ago by
alan.ocallaghan
▴ 160 • written 3 months ago by
Dario Strbenac
★ 1.5k
0
votes
0
replies
148
views
iSEE Difference Panel Missing
iSEEu
3 months ago
Dario Strbenac
★ 1.5k
0
votes
0
replies
156
views
clusterSweep Warning k Capped
bluster
3 months ago
Dario Strbenac
★ 1.5k
4
votes
6
replies
547
views
Merging of Human and Mouse SingleCellExperiment Objects Error
SingleCellExperiment
3 months ago
Dario Strbenac
★ 1.5k
2
votes
1
reply
258
views
DataFrame Printing User Control
S4Vectors
updated 5 months ago by
Hervé Pagès
16k • written 5 months ago by
Dario Strbenac
★ 1.5k
3
votes
1
reply
666
views
read10xCounts for Cell Ranger 7 Output
DropletUtils
updated 5 months ago by
ATpoint
★ 4.0k • written 18 months ago by
Dario Strbenac
★ 1.5k
5
votes
6
replies
630
views
DataFrame Construction With Non-standard Column
S4Vectors
updated 7 months ago by
Hervé Pagès
16k • written 7 months ago by
Dario Strbenac
★ 1.5k
2
votes
2
replies
1.5k
views
Matching Variants Between Two VCF Objects
VariantAnnotation
written 3.4 years ago by
Dario Strbenac
★ 1.5k
0
votes
1
reply
568
views
scRNAseq Download Errors
scRNAseq
updated 12 months ago by
shepherl
3.8k • written 12 months ago by
Dario Strbenac
★ 1.5k
4
votes
4
replies
1.2k
views
Flank GenomicRanges on Both Sides
GenomicRanges
updated 15 months ago by
James W. MacDonald
65k • written 15 months ago by
Dario Strbenac
★ 1.5k
2
votes
4
replies
721
views
Successor of genesBy Defunct Function
ensembldb
updated 15 months ago by
Hervé Pagès
16k • written 15 months ago by
Dario Strbenac
★ 1.5k
3
votes
3
replies
758
views
Subset and Assign MultiAssayExperiment
MultiAssayExperiment
updated 17 months ago by
Marcel Ramos
690 • written 17 months ago by
Dario Strbenac
★ 1.5k
2
votes
1
reply
669
views
Generalised Variant Annotator for GRIDSS2
StructuralVariantAnnotation
updated 24 months ago by
Daniel Cameron
▴ 40 • written 2.1 years ago by
Dario Strbenac
★ 1.5k
2
votes
3
replies
1.1k
views
Accession ID Conversion and Missing Results
UniProt.ws
updated 2.8 years ago by
James W. MacDonald
65k • written 2.8 years ago by
Dario Strbenac
★ 1.5k
0
votes
0
replies
666
views
Arithmetic Operations Between GRanges' Scores
GenomicRanges
2.9 years ago
Dario Strbenac
★ 1.5k
0
votes
0
replies
501
views
plotCopyNumberCallsAsLines Examples have Messy Text Overplotting
CopyNumberPlots
2.9 years ago
Dario Strbenac
★ 1.5k
3
votes
2
replies
2.5k
views
Convert DataFrame to data.frame While Keeping Column Name Syntax
S4Vectors
updated 2.9 years ago by
James W. MacDonald
65k • written 2.9 years ago by
Dario Strbenac
★ 1.5k
2
votes
1
reply
866
views
DataFrame or DFrame
S4Vectors
updated 2.9 years ago by
Marcel Ramos
690 • written 2.9 years ago by
Dario Strbenac
★ 1.5k
2
votes
2
replies
977
views
MutationalPatterns Signature Database Versions
MutationalPatterns
2.9 years ago
Dario Strbenac
★ 1.5k
3
votes
1
reply
798
views
MultiAssayExperiment sampleMap Requirement for All Assays
MultiAssayExperiment
updated 2.9 years ago by
Marcel Ramos
690 • written 3.0 years ago by
Dario Strbenac
★ 1.5k
0
votes
1
reply
605
views
DegNorm Convergence Statuses
Convergence
DegNorm
updated 3.0 years ago by
Jiping Wang
▴ 90 • written 3.0 years ago by
Dario Strbenac
★ 1.5k
2
votes
1
reply
3.1k
views
Convert UniProt Entry Names into Gene Symbols
Proteomics
ProteomicsWorkflow
UniProt.ws
updated 3.2 years ago by
James W. MacDonald
65k • written 3.2 years ago by
Dario Strbenac
★ 1.5k
4
votes
1
reply
1.4k
views
Changing Row Names of MultiAssayExperiment Assay
MultiAssayExperiment
updated 3.5 years ago by
nick.eagles
▴ 100 • written 3.5 years ago by
Dario Strbenac
★ 1.5k
0
votes
0
replies
742
views
Expected Output for Promoters Used for GRangesList
GenomicRanges
3.7 years ago
Dario Strbenac
★ 1.5k
2
votes
2
replies
1.3k
views
Obtaining Comments From VCF Header
VariantAnnotation
VCFHeader
updated 3.8 years ago by
Martin Morgan
25k • written 3.8 years ago by
Dario Strbenac
★ 1.5k
3
votes
2
replies
1.3k
views
Import or Subset VCF PASS Variants
VariantAnnotation
subset
ScanVcfParam
updated 4.0 years ago by
Martin Morgan
25k • written 4.0 years ago by
Dario Strbenac
★ 1.5k
2
votes
2
replies
633
views
Recommended Read Support Filter for Breakends
StructuralVariantAnnotation
updated 4.5 years ago by
Daniel Cameron
▴ 40 • written 4.6 years ago by
Dario Strbenac
★ 1.5k
2
votes
3
replies
1.0k
views
Accounting for Gene Set Overlaps in Goana and Kegga Results
limma
pathway
updated 4.7 years ago by
mikhael.manurung
▴ 270 • written 4.7 years ago by
Dario Strbenac
★ 1.5k
5
votes
11
replies
3.9k
views
Matching TCGA Aliquot ID to UUID or Barcode
TCGAutils
TCGAbiolinks
GenomicDataCommons
updated 4.8 years ago by
Marcel Ramos
690 • written 4.8 years ago by
Dario Strbenac
★ 1.5k
0
votes
3
replies
1.0k
views
rbind VCF Two Objects Column Names Error
VariantAnnotation
VCF
4.9 years ago
Dario Strbenac
★ 1.5k
4
votes
4
replies
1.2k
views
Mimic Counting of HTSeq-count Using countOverlaps
GenomicAlignments
countOverlaps
updated 4.9 years ago by
Martin Morgan
25k • written 4.9 years ago by
Dario Strbenac
★ 1.5k
3
votes
4
replies
1.2k
views
RNA-seq Statstical Models and Transcriptional Amplification
edgeR
DESeq2
Transcriptional Amplification
updated 5.1 years ago by
Aaron Lun
★ 28k • written 5.1 years ago by
Dario Strbenac
★ 1.5k
1
vote
4
replies
1.1k
views
qQCReport Missing Plots Described in Documentation
QuasR
updated 5.1 years ago by
Hotz, Hans-Rudolf
▴ 400 • written 5.2 years ago by
Dario Strbenac
★ 1.5k
6
votes
4
replies
7.5k
views
Converting UniProt Identifier Into Representative Gene Symbol
UniProt.ws
updated 16 months ago by
Marcel Ramos
690 • written 5.6 years ago by
Dario Strbenac
★ 1.5k
1
vote
1
reply
888
views
Mean-Variance Plot for Normalised Counts
EDASeq
meanVarPlot
updated 5.9 years ago by
davide risso
▴ 950 • written 5.9 years ago by
Dario Strbenac
★ 1.5k
0
votes
1
reply
817
views
meanVarPlot Ignores Sample Total Count Differences
EDASeq
meanVarPlot
5.9 years ago
Dario Strbenac
★ 1.5k
1
vote
4
replies
1.2k
views
Non-Redundant Edges in Connected Components
RBGL
updated 5.9 years ago by
Hervé Pagès
16k • written 5.9 years ago by
Dario Strbenac
★ 1.5k
1
vote
1
reply
919
views
Recommendations for Protein Network Data Structure
AnnotationDbi
Bimap
Interactome
6.0 years ago
Dario Strbenac
★ 1.5k
8
votes
3
replies
1.6k
views
Reproducibility of MultiDataSet Comparison
MultiDataSet
MultiAssayExperiment
updated 6.6 years ago by
Levi Waldron
★ 1.1k • written 6.6 years ago by
Dario Strbenac
★ 1.5k
0
votes
0
replies
887
views
Vertically Flipped Sashimi Plot
Gviz
Sashimi Plot
6.8 years ago
Dario Strbenac
★ 1.5k
1
vote
7
replies
2.5k
views
Mapping Probes to a Genome
BSgenome
biostrings
probe mapping
updated 7.0 years ago by
holgerbrandl
▴ 10 • written 7.7 years ago by
Dario Strbenac
★ 1.5k
1
vote
1
reply
1.0k
views
Most Efficient Application of Voom to Regularly Increasing Study
limma
voom
Batch Effect Correction
updated 7.0 years ago by
Aaron Lun
★ 28k • written 7.0 years ago by
Dario Strbenac
★ 1.5k
4
votes
3
replies
1.2k
views
plotMDS Input Feature Filtering
edgeR
Exploratory Data Analysis
updated 7.1 years ago by
Gordon Smyth
50k • written 7.1 years ago by
Dario Strbenac
★ 1.5k
9
votes
3
replies
3.0k
views
Importing Gene Symbols with makeTxDbFromGFF
GenomicFeatures
GFF3
updated 7.1 years ago by
Valerie Obenchain
★ 6.8k • written 7.1 years ago by
Dario Strbenac
★ 1.5k
1
vote
3
replies
937
views
Match Pattern Vector to Subject Vector
Biostings
Biostrings
updated 7.4 years ago by
Martin Morgan
25k • written 7.4 years ago by
Dario Strbenac
★ 1.5k
109 results • Page
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