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891
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13.7 years ago delhomme@embl.de ★ 1.2k
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updated 13.7 years ago by ▴ 210 • written 13.7 years ago by ▴ 20
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updated 13.7 years ago by ★ 6.8k • written 13.7 years ago by ▴ 30
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Question regarding COA plot generated by made4 package
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updated 13.7 years ago by ▴ 510 • written 13.7 years ago by ★ 6.8k
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updated 13.7 years ago by ★ 6.8k • written 13.7 years ago by ▴ 650
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Help strange GSEA error
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13.7 years ago Martin Morgan 25k
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Questions: How to convert egt file to txt
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13.7 years ago JiangZhengyu ▴ 40
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13.7 years ago Steve Lianoglou ★ 13k
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updated 13.7 years ago by ★ 6.6k • written 13.7 years ago by ▴ 30
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updated 13.7 years ago by 68k • written 13.7 years ago by ▴ 30
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How do I find up and down regulated genes for each contrast in LIMMA?
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updated 13.7 years ago by 21k • written 13.7 years ago by ▴ 50
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13.7 years ago Gordon Smyth 53k
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13.7 years ago bzguan@ucdavis.edu ▴ 30
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Help strange GSEA error
13.7 years ago Alejandro Quiroz ▴ 10
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gene set enrichment analysis of RNA-Seq data
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updated 13.7 years ago by 53k • written 13.8 years ago by ▴ 110
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13.7 years ago Gordon Smyth 53k
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13.7 years ago Barbara Bo-Ju Shih ▴ 40
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errors in FRMA
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updated 13.7 years ago by ▴ 830 • written 13.7 years ago by ▴ 510
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updated 13.7 years ago by ★ 11k • written 13.7 years ago by ▴ 550
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13.7 years ago Tim Smith ★ 1.1k
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Motif search -- access to JASPAR, MotIV package, , more TF-PWM relationships?
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updated 13.7 years ago by ▴ 10 • written 13.7 years ago by ▴ 160
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13.7 years ago Muralidharan V ▴ 60
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13.7 years ago Mayte Suarez-Farinas ▴ 510
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RCytoscape couldn't connect to host
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13.7 years ago Eleonora Lusito ▴ 10
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13.7 years ago Paul Shannon ▴ 750
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13.7 years ago aparna p ▴ 10
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nested factors in edgeR [was: something wrong with my design matrix in edgeR]
13.7 years ago Gordon Smyth 53k
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Model matrix used in analysis of Agilent single color data
limma limma
updated 13.7 years ago by ▴ 370 • written 13.7 years ago by ▴ 60
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13.7 years ago Paul Shannon ▴ 750
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updated 13.7 years ago by ★ 6.8k • written 13.7 years ago by ▴ 80
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13.7 years ago Gordon Smyth 53k
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Problem in analysing Agilent single color data using LIMMA
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updated 13.7 years ago by 68k • written 13.7 years ago by ▴ 60
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updated 13.7 years ago by 16k • written 13.8 years ago by ★ 2.0k
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gage gage
updated 13.8 years ago by ★ 1.6k • written 13.8 years ago by ▴ 200
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gage
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13.8 years ago Luo Weijun ★ 1.6k
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Design and not estimable coefficients
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updated 13.8 years ago by 53k • written 13.8 years ago by ▴ 40
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13.8 years ago Abhishek Pratap ▴ 410
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updated 13.8 years ago by ★ 6.8k • written 13.8 years ago by ▴ 370
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13.8 years ago Paul Theodor Pyl ▴ 80
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updated 13.8 years ago by ★ 13k • written 13.8 years ago by ▴ 200
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edgeR: effect of 'outlier' tags on differential expression calls
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updated 13.8 years ago by 53k • written 13.8 years ago by ▴ 330
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13.8 years ago Steve Lianoglou ★ 13k
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13.8 years ago Ingrid Lindquist ▴ 40
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edge-less pathways in graphite
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updated 13.8 years ago by ▴ 750 • written 13.8 years ago by ▴ 90
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Array weights in the 'removeBatchEffect' function?
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13.8 years ago Gordon Smyth 53k
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13.8 years ago Ramiro Rodríguez ▴ 30
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edgeR: tagwise dispersion in 2-factorial vs. 1-factorial design
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updated 13.8 years ago by 53k • written 13.8 years ago by ▴ 30
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I am not familiar with targeted HPLC-MS and I don't know what you mean by "peak areas". If it produces standard mass spec data, then limpa …
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Confirming my understanding after executing the code provided: this is similar to a design formula of `~0+mouse+group+group:allele`, except…
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Thanks heaps Gordon. I went with option 1 and no normalisation and all seems to have worked well. Cheers, Andrew
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